Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ47_RS00470 Genome accession   NZ_CP023388
Coordinates   88695..89171 (-) Length   158 a.a.
NCBI ID   WP_001186188.1    Uniprot ID   -
Organism   Escherichia coli strain 1105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 83695..94171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ47_RS00425 (CNQ47_00425) - 84170..84667 (-) 498 WP_000509811.1 hypothetical protein -
  CNQ47_RS00435 (CNQ47_00435) - 85260..86104 (-) 845 Protein_83 DUF4942 domain-containing protein -
  CNQ47_RS00440 (CNQ47_00440) - 86200..86397 (-) 198 WP_001609487.1 DUF957 domain-containing protein -
  CNQ47_RS00445 (CNQ47_00445) - 86409..86897 (-) 489 WP_001609486.1 DUF5983 family protein -
  CNQ47_RS00450 (CNQ47_00450) - 86894..87271 (-) 378 WP_001609485.1 TA system toxin CbtA family protein -
  CNQ47_RS00455 (CNQ47_00455) - 87318..87692 (-) 375 WP_001609483.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CNQ47_RS00460 (CNQ47_00460) - 87742..88386 (-) 645 WP_001609482.1 hypothetical protein -
  CNQ47_RS00465 (CNQ47_00465) - 88405..88626 (-) 222 WP_001609480.1 DUF987 domain-containing protein -
  CNQ47_RS00470 (CNQ47_00470) radC 88695..89171 (-) 477 WP_001186188.1 RadC family protein Machinery gene
  CNQ47_RS00475 (CNQ47_00475) - 89187..89666 (-) 480 WP_021563547.1 antirestriction protein -
  CNQ47_RS00480 (CNQ47_00480) - 89748..90566 (-) 819 WP_096057945.1 DUF932 domain-containing protein -
  CNQ47_RS27030 - 90665..90826 (-) 162 WP_235155994.1 hypothetical protein -
  CNQ47_RS00495 (CNQ47_00495) - 91315..91593 (-) 279 WP_001545361.1 hypothetical protein -
  CNQ47_RS00500 (CNQ47_00500) - 91854..92534 (-) 681 WP_096057946.1 WYL domain-containing protein -
  CNQ47_RS00505 (CNQ47_00505) - 92737..93621 (-) 885 WP_001116799.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17675.29 Da        Isoelectric Point: 7.2020

>NTDB_id=206841 CNQ47_RS00470 WP_001186188.1 88695..89171(-) (radC) [Escherichia coli strain 1105]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=206841 CNQ47_RS00470 WP_001186188.1 88695..89171(-) (radC) [Escherichia coli strain 1105]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCTGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGCGAAGTCACCCCCAGTAAGGCAGACCGGCTTATTACTGAACGTCTGGTTCAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment