Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PA4551 Genome accession   NC_002516
Coordinates   5098709..5099266 (+) Length   185 a.a.
NCBI ID   NP_253241.1    Uniprot ID   G3XD84
Organism   Pseudomonas aeruginosa PAO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5093709..5104266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA4547 pilR 5094985..5096322 (+) 1338 NP_253237.1 two-component response regulator PilR Regulator
  PA4548 - 5096368..5097462 (-) 1095 NP_253238.1 D-amino acid oxidase -
  PA4549 fimT 5097597..5098106 (+) 510 NP_253239.1 type 4 fimbrial biogenesis protein FimT -
  PA4550 fimU 5098212..5098718 (+) 507 NP_253240.1 type 4 fimbrial biogenesis protein FimU -
  PA4551 pilV 5098709..5099266 (+) 558 NP_253241.1 type 4 fimbrial biogenesis protein PilV Machinery gene
  PA4552 pilW 5099263..5100087 (+) 825 NP_253242.1 type 4 fimbrial biogenesis protein PilW -
  PA4553 pilX 5100084..5100671 (+) 588 NP_253243.1 type 4 fimbrial biogenesis protein PilX -
  PA4554 pilY1 5100683..5104168 (+) 3486 NP_253244.1 type 4 fimbrial biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=20671 PA4551 NP_253241.1 5098709..5099266(+) (pilV) [Pseudomonas aeruginosa PAO1]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=20671 PA4551 NP_253241.1 5098709..5099266(+) (pilV) [Pseudomonas aeruginosa PAO1]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995

Multiple sequence alignment