Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PA2983 Genome accession   NC_002516
Coordinates   3340114..3340749 (-) Length   211 a.a.
NCBI ID   NP_251673.1    Uniprot ID   Q9HZM1
Organism   Pseudomonas aeruginosa PAO1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3335114..3345749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA2977 murB 3336212..3337231 (-) 1020 NP_251667.1 UDP-N-acetylenolpyruvoylglucosamine reductase -
  PA2978 ptpA 3337228..3337692 (-) 465 NP_251668.1 phosphotyrosine protein phosphatase -
  PA2979 kdsB 3337692..3338456 (-) 765 NP_251669.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PA2980 - 3338456..3338641 (-) 186 NP_251670.1 hypothetical protein -
  PA2981 lpxK 3338679..3339677 (-) 999 NP_251671.1 tetraacyldisaccharide 4'-kinase -
  PA2982 - 3339677..3340117 (-) 441 NP_251672.1 hypothetical protein -
  PA2983 exbB 3340114..3340749 (-) 636 NP_251673.1 translocation protein TolQ Machinery gene
  PA2984 comA 3340822..3343047 (-) 2226 NP_251674.1 hypothetical protein Machinery gene
  PA2985 - 3343178..3343711 (+) 534 NP_251675.1 hypothetical protein -
  PA2986 - 3343799..3345100 (-) 1302 NP_251676.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=20657 PA2983 NP_251673.1 3340114..3340749(-) (exbB) [Pseudomonas aeruginosa PAO1]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=20657 PA2983 NP_251673.1 3340114..3340749(-) (exbB) [Pseudomonas aeruginosa PAO1]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment