Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   SMA_1013 Genome accession   HE613569
Coordinates   995563..996261 (-) Length   232 a.a.
NCBI ID   CCF02304.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 990563..1001261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_1007 - 990859..991557 (+) 699 CCF02298.1 Hypothetical protein -
  SMA_1008 - 991545..991775 (+) 231 CCF02299.1 Duplicated ATPase component BL0693 of energizing module of predicted ECF transporter -
  SMA_1009 - 991882..992400 (+) 519 CCF02300.1 Duplicated ATPase component BL0693 of energizing module of predicted ECF transporter -
  SMA_1010 xerS 992678..993748 (+) 1071 CCF02301.1 Tyrosine recombinase XerC Machinery gene
  SMA_1011 - 993856..994536 (-) 681 CCF02302.1 Pleiotropic regulator of exopolysaccharide synthesis, competence and biofilm formation Ftr, XRE family -
  SMA_1012 - 994619..995566 (-) 948 CCF02303.1 Two-component system histidine kinase -
  SMA_1013 braR 995563..996261 (-) 699 CCF02304.1 Two-component response regulator YvcP Regulator
  SMA_1014 - 996313..998292 (-) 1980 CCF02305.1 ABC transporter ATP-binding protein -
  SMA_1015 - 998294..999046 (-) 753 CCF02306.1 ABC transporter ATP-binding protein -
  SMA_1016 - 999541..1000371 (-) 831 CCF02307.1 Hypothetical protein -

Sequence


Protein


Download         Length: 232 a.a.        Molecular weight: 26874.90 Da        Isoelectric Point: 5.1386

>NTDB_id=20655 SMA_1013 CCF02304.1 995563..996261(-) (braR) [Streptococcus macedonicus ACA-DC 198]
MVVMTIFCYNKTMKQGKIYIVEDDETIVKLLKQHLSQSYDVFSVTNFRAIKQEVEEIKPDLILIDITLPYFNGFYWTTEL
RKSMTLPIIFISSSDDEMDTVMALNMGGDDFVSKPFSLTILDAKISAFLRRAYQFTSDNYQLEHFSLSRDGILSNGDDHI
TLSPTENKILAILFEHQNQVVPKEELLEKLWENESFIDQNTLSVNITRLRKKTQPLGFDRIHTVRGVGYLIK

Nucleotide


Download         Length: 699 bp        

>NTDB_id=20655 SMA_1013 CCF02304.1 995563..996261(-) (braR) [Streptococcus macedonicus ACA-DC 198]
ATGGTCGTGATGACCATTTTTTGTTACAATAAAACTATGAAACAAGGAAAGATTTATATTGTCGAGGACGATGAAACTAT
CGTTAAACTTTTAAAACAACATCTTAGTCAAAGTTACGATGTCTTTAGTGTCACTAATTTTCGAGCTATTAAGCAGGAAG
TCGAAGAAATCAAACCTGACCTTATCTTGATTGATATCACGTTGCCATATTTTAATGGTTTTTATTGGACAACAGAACTT
CGTAAAAGCATGACATTGCCGATTATTTTTATCTCATCTAGTGATGATGAAATGGATACTGTCATGGCACTTAATATGGG
TGGAGATGATTTTGTGTCAAAGCCATTTTCTCTAACGATTTTAGATGCCAAAATTTCAGCCTTTTTAAGACGTGCTTACC
AGTTTACCTCGGATAATTACCAATTAGAACATTTTTCTCTATCACGTGACGGGATTTTGTCAAACGGTGACGACCATATC
ACCCTATCTCCAACAGAAAATAAGATTTTAGCAATTCTCTTTGAACATCAAAATCAAGTCGTTCCCAAAGAGGAATTACT
CGAGAAGCTTTGGGAAAATGAAAGTTTCATTGACCAAAACACCCTTAGTGTTAACATAACACGACTCCGCAAGAAAACAC
AACCATTAGGTTTTGATCGTATTCACACCGTGAGAGGAGTTGGCTACCTTATAAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.413

93.966

0.427


Multiple sequence alignment