Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CNQ51_RS06090 Genome accession   NZ_CP023371
Coordinates   1171214..1171951 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 1283     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1166214..1176951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ51_RS06060 (CNQ51_06060) yfiL 1166372..1166737 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CNQ51_RS06065 (CNQ51_06065) aroF 1166947..1168017 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CNQ51_RS06070 (CNQ51_06070) tyrA 1168028..1169149 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CNQ51_RS06075 (CNQ51_06075) pheA 1169192..1170352 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  CNQ51_RS25840 pheL 1170451..1170498 (-) 48 WP_010723158.1 phe operon leader peptide -
  CNQ51_RS06080 (CNQ51_06080) raiA 1170602..1170943 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CNQ51_RS06090 (CNQ51_06090) comL 1171214..1171951 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CNQ51_RS06095 (CNQ51_06095) rluD 1172086..1173066 (+) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CNQ51_RS06100 (CNQ51_06100) yfiH 1173063..1173794 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  CNQ51_RS06105 (CNQ51_06105) clpC 1173924..1176497 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=206543 CNQ51_RS06090 WP_000197686.1 1171214..1171951(-) (comL) [Escherichia coli strain 1283]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=206543 CNQ51_RS06090 WP_000197686.1 1171214..1171951(-) (comL) [Escherichia coli strain 1283]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment