Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BSF20_RS11665 Genome accession   NZ_CP018152
Coordinates   2241937..2242581 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2236937..2247581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS11640 (BSF20_11400) - 2237376..2237717 (-) 342 WP_014305721.1 hypothetical protein -
  BSF20_RS11645 (BSF20_11405) degQ 2238183..2238323 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BSF20_RS11650 (BSF20_11410) - 2238475..2239350 (+) 876 WP_026092320.1 polyprenyl synthetase family protein -
  BSF20_RS11655 (BSF20_11415) comX 2239365..2239541 (+) 177 WP_044052947.1 competence pheromone ComX -
  BSF20_RS11660 (BSF20_11420) - 2239560..2241856 (+) 2297 Protein_2246 histidine kinase -
  BSF20_RS11665 (BSF20_11425) comA 2241937..2242581 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  BSF20_RS11670 (BSF20_11430) - 2242603..2242986 (+) 384 WP_044052949.1 hotdog fold thioesterase -
  BSF20_RS11675 (BSF20_11435) mnhG 2243026..2243400 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BSF20_RS11680 (BSF20_11440) - 2243384..2243668 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  BSF20_RS11685 (BSF20_11445) - 2243668..2244144 (-) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  BSF20_RS11690 (BSF20_11450) - 2244150..2245631 (-) 1482 WP_044052950.1 Na+/H+ antiporter subunit D -
  BSF20_RS11695 (BSF20_11455) - 2245624..2245965 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BSF20_RS11700 (BSF20_11460) - 2245965..2246396 (-) 432 WP_044052951.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=206532 BSF20_RS11665 WP_003152052.1 2241937..2242581(+) (comA) [Bacillus amyloliquefaciens strain LM2303]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=206532 BSF20_RS11665 WP_003152052.1 2241937..2242581(+) (comA) [Bacillus amyloliquefaciens strain LM2303]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment