Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BSF20_RS09730 Genome accession   NZ_CP018152
Coordinates   1865893..1866582 (+) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1860893..1871582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS09705 (BSF20_09500) degS 1861177..1862340 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  BSF20_RS09710 (BSF20_09505) degU 1862417..1863106 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BSF20_RS09715 (BSF20_09510) - 1863204..1864052 (+) 849 WP_044052857.1 DegV family protein -
  BSF20_RS09720 (BSF20_09515) comFA 1864160..1865545 (+) 1386 WP_044052858.1 DEAD/DEAH box helicase Machinery gene
  BSF20_RS09725 (BSF20_09520) - 1865603..1865887 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  BSF20_RS09730 (BSF20_09525) comFC 1865893..1866582 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  BSF20_RS09735 (BSF20_09530) - 1866656..1867075 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  BSF20_RS09740 (BSF20_09535) flgM 1867145..1867411 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSF20_RS09745 (BSF20_09540) - 1867426..1867908 (+) 483 WP_003151394.1 flagellar protein FlgN -
  BSF20_RS09750 (BSF20_09545) flgK 1867924..1869441 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  BSF20_RS09755 (BSF20_09550) flgL 1869453..1870370 (+) 918 WP_060657505.1 flagellar hook-associated protein FlgL -
  BSF20_RS09760 (BSF20_09555) - 1870461..1871030 (+) 570 WP_003151397.1 DUF6470 family protein -
  BSF20_RS09765 (BSF20_09560) fliW 1871060..1871491 (+) 432 WP_060657507.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=206528 BSF20_RS09730 WP_196616643.1 1865893..1866582(+) (comFC) [Bacillus amyloliquefaciens strain LM2303]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=206528 BSF20_RS09730 WP_196616643.1 1865893..1866582(+) (comFC) [Bacillus amyloliquefaciens strain LM2303]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAGGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment