Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BSF20_RS04990 Genome accession   NZ_CP018152
Coordinates   946034..946987 (-) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 941034..951987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS04970 (BSF20_04885) - 941916..943337 (+) 1422 WP_014304342.1 MDR family MFS transporter -
  BSF20_RS04975 (BSF20_04890) - 943379..944323 (-) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  BSF20_RS04980 (BSF20_04895) - 944345..945103 (-) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  BSF20_RS04985 (BSF20_04900) - 945097..946044 (-) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  BSF20_RS04990 (BSF20_04905) ceuB 946034..946987 (-) 954 WP_003156332.1 ABC transporter permease Machinery gene
  BSF20_RS05000 (BSF20_04910) - 947402..948766 (+) 1365 WP_072588301.1 aspartate kinase -
  BSF20_RS05005 - 948846..948956 (+) 111 WP_369719092.1 YjcZ family sporulation protein -
  BSF20_RS05010 (BSF20_04915) phrC 949106..949225 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BSF20_RS05015 (BSF20_04920) rapC 949209..950357 (-) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  BSF20_RS05020 (BSF20_04925) - 950510..951943 (-) 1434 WP_161625271.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=206507 BSF20_RS04990 WP_003156332.1 946034..946987(-) (ceuB) [Bacillus amyloliquefaciens strain LM2303]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=206507 BSF20_RS04990 WP_003156332.1 946034..946987(-) (ceuB) [Bacillus amyloliquefaciens strain LM2303]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment