Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   BSF20_RS01340 Genome accession   NZ_CP018152
Coordinates   243707..244660 (-) Length   317 a.a.
NCBI ID   WP_044053096.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 238707..249660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS01310 (BSF20_01285) - 238859..239845 (-) 987 WP_003155054.1 ABC transporter ATP-binding protein -
  BSF20_RS01315 (BSF20_01290) - 240019..240804 (-) 786 WP_012117278.1 DUF2268 domain-containing protein -
  BSF20_RS01320 (BSF20_01295) fabF 240888..242126 (-) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  BSF20_RS01325 (BSF20_01300) - 242149..243087 (-) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  BSF20_RS01330 (BSF20_01305) - 243255..243473 (+) 219 WP_044053097.1 hypothetical protein -
  BSF20_RS01335 (BSF20_01310) comZ 243503..243694 (-) 192 WP_003155061.1 ComZ family protein Regulator
  BSF20_RS01340 (BSF20_01315) med 243707..244660 (-) 954 WP_044053096.1 BMP family ABC transporter substrate-binding protein Regulator
  BSF20_RS01345 (BSF20_01320) - 244750..245316 (-) 567 WP_003155065.1 hypothetical protein -
  BSF20_RS01350 (BSF20_01325) - 245399..246133 (-) 735 WP_014304780.1 hypothetical protein -
  BSF20_RS01360 (BSF20_01335) - 246394..246579 (+) 186 WP_003155069.1 YjzD family protein -
  BSF20_RS01365 (BSF20_01340) - 246615..246794 (-) 180 WP_044053095.1 YjzC family protein -
  BSF20_RS01370 (BSF20_01345) argF 246870..247841 (-) 972 WP_044053094.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35375.97 Da        Isoelectric Point: 4.5594

>NTDB_id=206497 BSF20_RS01340 WP_044053096.1 243707..244660(-) (med) [Bacillus amyloliquefaciens strain LM2303]
MITRLVMIFSVLLLLSGCTQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKTIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=206497 BSF20_RS01340 WP_044053096.1 243707..244660(-) (med) [Bacillus amyloliquefaciens strain LM2303]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCACACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTCCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAACGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTCGGTGTCATCGCCTCTTTTCTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAATCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.233

100

0.782

Multiple sequence alignment