Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SMA_0610 Genome accession   HE613569
Coordinates   610526..611122 (+) Length   198 a.a.
NCBI ID   CCF01901.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 605526..616122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0606 gpmA 605832..606524 (+) 693 CCF01897.1 Phosphoglycerate mutase -
  SMA_0607 yrxA 606800..607321 (+) 522 CCF01898.1 Transcriptional repressor for NAD biosynthesis in gram-positives -
  SMA_0608 - 607597..608151 (+) 555 CCF01899.1 Substrate-specific component NiaX of predicted niacin ECF transporter -
  SMA_0609 - 608307..610460 (+) 2154 CCF01900.1 Cell division protein FtsI [Peptidoglycan synthetase] -
  SMA_0610 recR 610526..611122 (+) 597 CCF01901.1 Recombination protein RecR Machinery gene
  SMA_0611 ddl 611359..612405 (+) 1047 CCF01902.1 D-alanine--D-alanine ligase -
  SMA_0612 - 612510..613070 (-) 561 CCF01903.1 Substrate-specific component FolT of folate ECF transporter -
  SMA_0613 murF 613314..614678 (+) 1365 CCF01904.1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase -
  SMA_0614 - 614691..615845 (+) 1155 Protein_613 Hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21707.84 Da        Isoelectric Point: 4.5278

>NTDB_id=20637 SMA_0610 CCF01901.1 610526..611122(+) (recR) [Streptococcus macedonicus ACA-DC 198]
MLYPTPIAKLIDSFTKLPGIGIKTATRLAFYTIGMSDEDVNEFAKNLLAAKRELTYCSVCGNLTDEDPCNICTDETRDHS
VILVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGVGPDDINLKSLITRLMDSEVNEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=20637 SMA_0610 CCF01901.1 610526..611122(+) (recR) [Streptococcus macedonicus ACA-DC 198]
ATGCTTTATCCAACACCTATCGCAAAGCTGATTGATAGTTTTACAAAATTACCAGGAATTGGTATAAAAACAGCAACACG
TTTGGCTTTCTACACGATTGGAATGTCAGATGAAGATGTGAATGAATTCGCCAAAAATTTATTGGCAGCTAAGCGTGAAT
TGACTTATTGTTCTGTTTGTGGGAATTTAACAGATGAAGACCCTTGTAATATCTGTACAGATGAAACTCGTGATCATTCC
GTTATTTTAGTGGTTGAAGATTCAAAAGACGTATCTGCCATGGAAAAAATTCAAGAGTATCATGGCTTGTACCATGTCTT
GCATGGCTTGATTTCACCAATGAATGGTGTCGGACCAGATGATATTAATTTGAAATCATTAATTACACGTTTAATGGATA
GTGAGGTTAACGAAGTGATTATTGCAACCAATGCAACCGCAGACGGTGAAGCAACATCTATGTATATCTCACGTGTCCTA
AAACCAGCAGGAATCAAGGTAACACGTTTAGCACGTGGACTGGCTGTTGGCTCAGACATCGAATACGCCGACGAAGTCAC
CCTACTTCGTGCCATAGAAAACCGAACAGAATTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

65.152

100

0.652
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475