Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | VC_RS12700 | Genome accession | NC_002505 |
| Coordinates | 2804001..2804585 (-) | Length | 194 a.a. |
| NCBI ID | WP_000902745.1 | Uniprot ID | A0A0H6BVQ2 |
| Organism | Vibrio cholerae O1 biovar El Tor str. N16961 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2799001..2809585
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VC_RS12675 (VC2628) | aroB | 2799345..2800430 (-) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
| VC_RS12680 (VC2629) | aroK | 2800458..2800982 (-) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| VC_RS12685 (VC2630) | pilQ | 2801169..2802884 (-) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| VC_RS12690 (VC2631) | pilP | 2802910..2803428 (-) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| VC_RS12695 (VC2632) | pilO | 2803418..2804008 (-) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| VC_RS12700 (VC2633) | pilN | 2804001..2804585 (-) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| VC_RS12705 (VC2634) | pilM | 2804575..2805591 (-) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| VC_RS12710 (VC2635) | - | 2805734..2808211 (+) | 2478 | WP_000668733.1 | penicillin-binding protein 1A | - |
| VC_RS12715 (VC2636) | oxyR | 2808285..2809178 (-) | 894 | WP_001025909.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21964.42 Da Isoelectric Point: 9.9503
>NTDB_id=20633 VC_RS12700 WP_000902745.1 2804001..2804585(-) (pilN) [Vibrio cholerae O1 biovar El Tor str. N16961]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQAGGAHNG
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQAGGAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=20633 VC_RS12700 WP_000902745.1 2804001..2804585(-) (pilN) [Vibrio cholerae O1 biovar El Tor str. N16961]
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCAGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAACAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCAGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAACAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilN | Vibrio campbellii strain DS40M4 |
60.452 |
91.237 |
0.552 |