Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CNQ54_RS06255 Genome accession   NZ_CP023359
Coordinates   1204421..1205158 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 1943     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1199421..1210158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ54_RS06225 (CNQ54_06225) yfiL 1199579..1199944 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CNQ54_RS06230 (CNQ54_06230) aroF 1200154..1201224 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CNQ54_RS06235 (CNQ54_06235) tyrA 1201235..1202356 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CNQ54_RS06240 (CNQ54_06240) pheA 1202399..1203559 (-) 1161 WP_000200100.1 bifunctional chorismate mutase/prephenate dehydratase -
  CNQ54_RS25885 pheL 1203658..1203705 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CNQ54_RS06245 (CNQ54_06245) raiA 1203809..1204150 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CNQ54_RS06255 (CNQ54_06255) comL 1204421..1205158 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CNQ54_RS06260 (CNQ54_06260) rluD 1205293..1206273 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CNQ54_RS06265 (CNQ54_06265) yfiH 1206270..1207001 (+) 732 WP_001543096.1 purine nucleoside phosphorylase YfiH -
  CNQ54_RS06270 (CNQ54_06270) clpC 1207131..1209704 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=206302 CNQ54_RS06255 WP_000197686.1 1204421..1205158(-) (comL) [Escherichia coli strain 1943]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=206302 CNQ54_RS06255 WP_000197686.1 1204421..1205158(-) (comL) [Escherichia coli strain 1943]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment