Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   BOC72_RS11390 Genome accession   NZ_CP018138
Coordinates   2072143..2072901 (+) Length   252 a.a.
NCBI ID   WP_000410376.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SP64     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2067143..2077901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOC72_RS11360 (BOC72_02130) comE 2067740..2068492 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  BOC72_RS11365 (BOC72_02131) comD/comD1 2068489..2069814 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  BOC72_RS11370 (BOC72_02132) comC/comC1 2069835..2069960 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  BOC72_RS11380 (BOC72_02134) rlmH 2070242..2070721 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  BOC72_RS11385 (BOC72_02135) htrA 2070904..2072085 (+) 1182 WP_000681597.1 S1C family serine protease Regulator
  BOC72_RS11390 (BOC72_02136) spo0J 2072143..2072901 (+) 759 WP_000410376.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29130.48 Da        Isoelectric Point: 8.0022

>NTDB_id=206260 BOC72_RS11390 WP_000410376.1 2072143..2072901(+) (spo0J) [Streptococcus pneumoniae strain SP64]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEACAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=206260 BOC72_RS11390 WP_000410376.1 2072143..2072901(+) (spo0J) [Streptococcus pneumoniae strain SP64]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCATG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment