Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ55_RS22610 Genome accession   NZ_CP023357
Coordinates   4449157..4449633 (-) Length   158 a.a.
NCBI ID   WP_123005962.1    Uniprot ID   -
Organism   Escherichia coli strain 317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4444157..4454633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ55_RS27325 (CNQ55_22580) - 4446905..4447033 (-) 129 Protein_4179 transcriptional regulator -
  CNQ55_RS26715 - 4447009..4447158 (-) 150 Protein_4180 restriction endonuclease subunit M -
  CNQ55_RS22585 (CNQ55_22585) - 4447243..4447440 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  CNQ55_RS22590 (CNQ55_22590) - 4447452..4447940 (-) 489 WP_000777547.1 DUF5983 family protein -
  CNQ55_RS22595 (CNQ55_22595) - 4447937..4448311 (-) 375 WP_047615650.1 TA system toxin CbtA family protein -
  CNQ55_RS22600 (CNQ55_22600) - 4448401..4448769 (-) 369 WP_042965901.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CNQ55_RS22605 (CNQ55_22605) - 4448849..4449070 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  CNQ55_RS22610 (CNQ55_22610) radC 4449157..4449633 (-) 477 WP_123005962.1 RadC family protein Machinery gene
  CNQ55_RS22615 (CNQ55_22615) - 4449649..4450128 (-) 480 WP_096037620.1 antirestriction protein -
  CNQ55_RS22620 (CNQ55_22620) - 4450394..4451212 (-) 819 WP_001175153.1 DUF932 domain-containing protein -
  CNQ55_RS22625 (CNQ55_22625) - 4451302..4451535 (-) 234 WP_001278287.1 DUF905 family protein -
  CNQ55_RS22630 (CNQ55_22630) - 4451541..4452218 (-) 678 WP_001097301.1 hypothetical protein -
  CNQ55_RS22635 (CNQ55_22635) - 4452366..4453046 (-) 681 WP_001282919.1 WYL domain-containing protein -
  CNQ55_RS22640 (CNQ55_22640) - 4453249..4454133 (-) 885 WP_000010391.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=206259 CNQ55_RS22610 WP_123005962.1 4449157..4449633(-) (radC) [Escherichia coli strain 317]
MQQLSFLPGEMTPGERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRTLYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=206259 CNQ55_RS22610 WP_123005962.1 4449157..4449633(-) (radC) [Escherichia coli strain 317]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACACCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCACCCTGTACCACAATGCTGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment