Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CJU63_RS15365 Genome accession   NZ_CP023349
Coordinates   2950674..2951411 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ETEC-2264     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2945674..2956411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJU63_RS15350 (CJU63_15350) clpC 2946128..2948701 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CJU63_RS15355 (CJU63_15355) yfiH 2948831..2949562 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  CJU63_RS15360 (CJU63_15360) rluD 2949559..2950539 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CJU63_RS15365 (CJU63_15365) comL 2950674..2951411 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CJU63_RS15375 (CJU63_15375) raiA 2951682..2952023 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CJU63_RS27575 pheL 2952127..2952174 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CJU63_RS15380 (CJU63_15380) pheA 2952273..2953433 (+) 1161 WP_001704619.1 bifunctional chorismate mutase/prephenate dehydratase -
  CJU63_RS15385 (CJU63_15385) tyrA 2953476..2954597 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CJU63_RS15390 (CJU63_15390) aroF 2954608..2955678 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CJU63_RS15395 (CJU63_15395) yfiL 2955888..2956253 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=206063 CJU63_RS15365 WP_000197686.1 2950674..2951411(+) (comL) [Escherichia coli strain ETEC-2264]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=206063 CJU63_RS15365 WP_000197686.1 2950674..2951411(+) (comL) [Escherichia coli strain ETEC-2264]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment