Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CLD04_RS17185 Genome accession   NZ_CP023257
Coordinates   3229732..3230367 (-) Length   211 a.a.
NCBI ID   WP_041333100.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3224732..3235367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS17165 (CLD04_17165) yvzF 3225789..3225974 (-) 186 WP_003221676.1 YvzF family protein -
  CLD04_RS17170 (CLD04_17170) gerAA 3226092..3227540 (+) 1449 WP_041333095.1 spore germination receptor protein GerAA -
  CLD04_RS17175 (CLD04_17175) gerAB 3227509..3228606 (+) 1098 WP_041333097.1 spore germination receptor protein GerAB -
  CLD04_RS17180 (CLD04_17180) gerAC 3228603..3229724 (+) 1122 WP_041333099.1 spore germination receptor protein GerAC -
  CLD04_RS17185 (CLD04_17185) vraR 3229732..3230367 (-) 636 WP_041333100.1 two-component system response regulator LiaR Regulator
  CLD04_RS17190 (CLD04_17190) liaS 3230345..3231427 (-) 1083 WP_014480831.1 two-component system sensor histidine kinase LiaS -
  CLD04_RS17195 (CLD04_17195) liaF 3231424..3232149 (-) 726 WP_014480832.1 LiaRS two-component regulatory system accessory protein LiaF -
  CLD04_RS17200 (CLD04_17200) liaG 3232183..3233055 (-) 873 WP_095843931.1 DUF4097 domain-containing protein -
  CLD04_RS17205 (CLD04_17205) liaH 3233156..3233833 (-) 678 WP_015714684.1 stress responsive protein LiaH -
  CLD04_RS17210 (CLD04_17210) liaI 3233860..3234240 (-) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23122.83 Da        Isoelectric Point: 5.3750

>NTDB_id=205820 CLD04_RS17185 WP_041333100.1 3229732..3230367(-) (vraR) [Bacillus subtilis strain TLO3]
MIRVLLIDDHEMVRMGLAAFLEAQPDIKVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=205820 CLD04_RS17185 WP_041333100.1 3229732..3230367(-) (vraR) [Bacillus subtilis strain TLO3]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TAAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTAGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACAAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTAGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACAGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

51.905

99.526

0.517
  degU Bacillus subtilis subsp. subtilis str. 168

37.668

100

0.398