Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BRL64_RS08105 Genome accession   NZ_CP018100
Coordinates   1563415..1564317 (+) Length   300 a.a.
NCBI ID   WP_081124372.1    Uniprot ID   -
Organism   Bacillus safensis strain BRM1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1558415..1569317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRL64_RS08085 (BRL64_07940) - 1559078..1560817 (+) 1740 WP_046310920.1 hypothetical protein -
  BRL64_RS08090 (BRL64_07945) - 1560814..1561089 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  BRL64_RS08095 (BRL64_07950) sucC 1561266..1562426 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  BRL64_RS08100 (BRL64_07955) sucD 1562449..1563351 (+) 903 WP_081124371.1 succinate--CoA ligase subunit alpha -
  BRL64_RS08105 (BRL64_07960) dprA 1563415..1564317 (+) 903 WP_081124372.1 DNA-processing protein DprA Machinery gene
  BRL64_RS08110 (BRL64_07965) topA 1564511..1566586 (+) 2076 WP_081124373.1 type I DNA topoisomerase -
  BRL64_RS08115 (BRL64_07970) trmFO 1566657..1567961 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BRL64_RS08120 (BRL64_07975) xerC 1568024..1568941 (+) 918 WP_034281771.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34121.56 Da        Isoelectric Point: 9.1076

>NTDB_id=205761 BRL64_RS08105 WP_081124372.1 1563415..1564317(+) (dprA) [Bacillus safensis strain BRM1]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDLTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHEKMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTEPT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=205761 BRL64_RS08105 WP_081124372.1 1563415..1564317(+) (dprA) [Bacillus safensis strain BRM1]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACCTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATTGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAGCATTTATACCCAAAAGAGCATGA
GAAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCACCCTCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCACTGACGAAAGGAACCATCGTGATACAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCGGTTGCTGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCAACAAAAGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACCAACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.861

96

0.527
  dprA Legionella pneumophila strain ERS1305867

38.689

100

0.393
  dprA Lactococcus lactis subsp. cremoris KW2

39.1

96.333

0.377

Multiple sequence alignment