Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CLD04_RS05520 Genome accession   NZ_CP023257
Coordinates   1039577..1040224 (+) Length   215 a.a.
NCBI ID   WP_046160374.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1034577..1045224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS05505 (CLD04_05505) glpD 1034751..1036418 (+) 1668 WP_015715569.1 glycerol-3-phosphate dehydrogenase -
  CLD04_RS05510 (CLD04_05510) pgcA 1036548..1038293 (+) 1746 WP_017695406.1 phosphoglucomutase -
  CLD04_RS05515 (CLD04_05515) yhcY 1038441..1039580 (+) 1140 WP_032721229.1 two-component system sensor histidine kinase YhcY -
  CLD04_RS05520 (CLD04_05520) vraR 1039577..1040224 (+) 648 WP_046160374.1 two-component system response regulator YhcZ Regulator
  CLD04_RS05525 (CLD04_05525) yhdA 1040221..1040745 (+) 525 WP_017695404.1 FMN-dependent NADPH-azoreductase -
  CLD04_RS05530 (CLD04_05530) yhdB 1040760..1041002 (-) 243 WP_003233373.1 YhdB family protein -
  CLD04_RS05535 (CLD04_05535) yhdC 1041203..1041526 (+) 324 WP_003233371.1 YqzG/YhdC family protein -
  CLD04_RS05540 (CLD04_05540) lytF 1041568..1043028 (-) 1461 WP_014479292.1 peptidoglycan endopeptidase LytF -
  CLD04_RS05545 (CLD04_05545) nsrR 1043180..1043620 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24175.81 Da        Isoelectric Point: 6.1600

>NTDB_id=205728 CLD04_RS05520 WP_046160374.1 1039577..1040224(+) (vraR) [Bacillus subtilis strain TLO3]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEYVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=205728 CLD04_RS05520 WP_046160374.1 1039577..1040224(+) (vraR) [Bacillus subtilis strain TLO3]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACGGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGAATATCATTGTGCTG
ACGAGCTACTCTGACCAGGAGTACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

39.301

100

0.419

Multiple sequence alignment