Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   CLD04_RS00225 Genome accession   NZ_CP023257
Coordinates   41354..42181 (+) Length   275 a.a.
NCBI ID   WP_003226767.1    Uniprot ID   A0ABU0VCW3
Organism   Bacillus subtilis strain TLO3     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 36354..47181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS00200 (CLD04_00200) efpO 37417..38859 (+) 1443 WP_095843380.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  CLD04_RS00205 (CLD04_00205) tmk 38856..39494 (+) 639 WP_015253015.1 dTMP kinase -
  CLD04_RS00210 (CLD04_00210) darA 39568..39897 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  CLD04_RS00215 (CLD04_00215) yaaR 39910..40350 (+) 441 WP_009966249.1 YaaR family protein -
  CLD04_RS00220 (CLD04_00220) holB 40362..41351 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  CLD04_RS00225 (CLD04_00225) yaaT 41354..42181 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT Regulator
  CLD04_RS00230 (CLD04_00230) yabA 42196..42555 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  CLD04_RS00235 (CLD04_00235) trmNF 42614..43357 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CLD04_RS00240 (CLD04_00240) yazA 43344..43643 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  CLD04_RS00245 (CLD04_00245) rsmI 43618..44496 (+) 879 WP_087961215.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CLD04_RS00250 (CLD04_00250) abrB 44545..44835 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 31233.09 Da        Isoelectric Point: 4.7700

>NTDB_id=205700 CLD04_RS00225 WP_003226767.1 41354..42181(+) (yaaT) [Bacillus subtilis strain TLO3]
MYNVIGVRFKKAGKIYYFDPNGFHIEHDSCVIVETVRGVEYGQVVIANKQVDEHDVVLPLRKVIRVADERDLLIVEENKQ
EALSAFDICQKKVIEHGLDMKLVDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGP
CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQLPDIGEMITTANGPAKVVGLNI
LERVLQVELINREKVIEYTWEELLEEGVVSAQTTD

Nucleotide


Download         Length: 828 bp        

>NTDB_id=205700 CLD04_RS00225 WP_003226767.1 41354..42181(+) (yaaT) [Bacillus subtilis strain TLO3]
TTGTACAATGTAATTGGTGTCCGCTTTAAGAAAGCGGGTAAAATATATTATTTTGATCCGAATGGATTTCATATAGAACA
TGACAGCTGCGTAATTGTAGAAACTGTCAGAGGCGTTGAGTACGGCCAGGTCGTAATTGCAAATAAACAGGTGGATGAGC
ATGATGTGGTGCTTCCCCTTCGAAAAGTGATACGTGTGGCTGACGAACGCGATCTTCTCATTGTAGAAGAAAATAAACAG
GAAGCACTATCAGCATTTGATATCTGCCAAAAGAAAGTGATTGAGCATGGCTTGGATATGAAGCTGGTCGATGTTGAATT
CACGTTTGATCGCAATAAAGTCATTTTTTACTTCACTGCTGACGGCCGAGTCGACTTTAGAGAGCTTGTAAAGGATTTGG
CTTCTATCTTTAAGACAAGAATTGAGCTGCGCCAAATCGGAGTGAGGGATGAGGCAAAAATGCTCGGAGGAATCGGTCCT
TGTGGAAGAATGCTTTGCTGTTCAACGTTTCTTGGAGATTTTGAACCCGTTTCCATTAAAATGGCCAAGGATCAGAACTT
GTCTTTAAATCCTACGAAGATTTCGGGTCTTTGCGGACGATTGATGTGCTGTCTAAAATATGAGAACGATGAGTATGAGA
CGGCAAAAGAACAGCTTCCGGATATAGGAGAAATGATTACGACAGCAAACGGTCCCGCAAAGGTCGTCGGACTAAATATT
CTGGAACGGGTGCTTCAGGTGGAACTGATAAACCGTGAAAAAGTGATAGAATATACTTGGGAAGAGCTCTTGGAAGAGGG
CGTCGTATCCGCACAAACCACAGATTAA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(62-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

99.636

100

0.996