Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BRW62_RS08855 Genome accession   NZ_CP018092
Coordinates   1775562..1776944 (+) Length   460 a.a.
NCBI ID   WP_099799130.1    Uniprot ID   A0A2D2Q2R5
Organism   Parathermosynechococcus lividus PCC 6715     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1770562..1781944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRW62_RS08830 (BRW62_08540) - 1770989..1771828 (-) 840 WP_099799125.1 hypothetical protein -
  BRW62_RS08835 (BRW62_08545) - 1771983..1773155 (-) 1173 WP_099799126.1 transaldolase -
  BRW62_RS08840 (BRW62_08550) leuC 1773307..1774710 (+) 1404 WP_099799127.1 3-isopropylmalate dehydratase large subunit -
  BRW62_RS08845 (BRW62_08555) - 1774753..1775073 (+) 321 WP_099799128.1 phasin family protein -
  BRW62_RS08850 (BRW62_08560) - 1775067..1775549 (+) 483 WP_099799129.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  BRW62_RS08855 (BRW62_08565) radA 1775562..1776944 (+) 1383 WP_099799130.1 DNA repair protein RadA Machinery gene
  BRW62_RS08860 (BRW62_08570) - 1776949..1778421 (-) 1473 WP_227517333.1 pitrilysin family protein -
  BRW62_RS08865 (BRW62_08575) - 1778629..1781121 (+) 2493 WP_099799131.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49209.96 Da        Isoelectric Point: 7.8901

>NTDB_id=205701 BRW62_RS08855 WP_099799130.1 1775562..1776944(+) (radA) [Parathermosynechococcus lividus PCC 6715]
MPKAKVLYICRECGAESLQYFGRCPSCGQWNTLDEQVTSPLTTESGTRRSPRRSHLAQPLAAKPLAAIEEQAHPRSLSGF
SELDRVLGGGIVVGSLVLVAGEPGIGKSTLLLQMAAQLATRQRVLYVCAEESGQQVKLRSQRLAVAVPESLYLLAETDLE
IILQELAHLQPQLVIIDSIQAVYLPQLTAAPGSVSQVREGTAALMRLAKRDHISLFIVGHVTKEGAIAGPKVLEHLVDTV
LYFEGDRFASHRLVRAVKNRFGASQEIGVFEMGAQGLVEVTNPSALFLGDRDPAPGTATIVACEGTRPLVVELQSLVSPT
SYPSPRRTTTGIEYNRFLQILAVLEKRLGVPLSKLDAYVATSGGLTVAEPAADLGVAVAVVASFRDRWVQPHTVIIGEVG
LGGQVRAVSQLELRLREAAKLGFRRAIIPHSQQCAIAGLEMCPVSRVADAIVAALAAPAP

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=205701 BRW62_RS08855 WP_099799130.1 1775562..1776944(+) (radA) [Parathermosynechococcus lividus PCC 6715]
ATGCCTAAGGCGAAGGTACTGTACATCTGCCGCGAGTGCGGTGCCGAATCGCTGCAATATTTTGGTCGCTGTCCCAGTTG
TGGTCAGTGGAATACGCTGGATGAGCAGGTGACCTCACCCCTGACGACCGAGTCGGGTACTCGGCGATCGCCCCGTCGTA
GCCATCTTGCCCAACCCCTTGCGGCCAAACCACTAGCTGCGATTGAGGAGCAGGCGCACCCCCGCTCCCTCTCTGGGTTT
AGCGAACTGGATCGTGTCTTGGGGGGGGGCATTGTTGTGGGTTCCTTAGTGCTGGTGGCGGGTGAACCCGGAATTGGCAA
ATCGACCCTCTTGCTGCAAATGGCGGCTCAGTTAGCCACTCGGCAGCGGGTGCTCTACGTTTGTGCCGAGGAGTCAGGGC
AACAGGTAAAGTTGCGATCGCAACGCTTAGCCGTCGCTGTACCGGAGTCCCTCTACTTGTTGGCAGAGACCGACCTAGAA
ATTATTCTCCAAGAGCTGGCTCACCTGCAACCGCAGTTAGTCATTATTGACAGTATTCAAGCGGTGTATTTACCGCAACT
GACCGCTGCCCCTGGCTCTGTCTCCCAAGTGCGTGAGGGCACCGCCGCCTTAATGCGCCTCGCTAAGCGGGATCACATCA
GCTTATTTATTGTTGGCCATGTCACCAAGGAAGGGGCGATCGCTGGGCCAAAGGTGTTGGAGCATTTAGTGGATACGGTA
CTCTACTTTGAGGGCGATCGCTTTGCCAGCCACCGCCTCGTGCGCGCCGTCAAAAATCGCTTTGGTGCTAGTCAGGAAAT
TGGTGTTTTTGAAATGGGTGCCCAAGGCTTAGTGGAAGTCACCAATCCCTCAGCGTTGTTTTTGGGCGATCGCGACCCCG
CACCGGGCACCGCAACCATCGTGGCCTGCGAAGGCACCCGCCCCCTCGTCGTCGAACTGCAAAGCTTGGTCAGCCCCACT
AGCTACCCCTCCCCCCGCCGCACTACCACTGGCATTGAATACAATCGCTTCCTGCAAATTTTAGCCGTCCTAGAAAAGCG
CCTTGGGGTTCCCCTCTCTAAGCTTGATGCCTACGTGGCCACCTCAGGGGGCTTAACCGTAGCGGAACCCGCAGCGGATC
TGGGCGTTGCCGTTGCAGTGGTAGCCAGCTTTCGCGATCGCTGGGTGCAGCCCCACACCGTCATCATTGGCGAAGTGGGG
TTAGGCGGGCAAGTACGGGCGGTGTCGCAACTTGAGCTACGGTTGCGGGAAGCCGCGAAGCTAGGGTTTCGCCGTGCCAT
TATTCCCCACAGCCAACAGTGTGCGATTGCCGGTCTTGAGATGTGTCCCGTGAGCCGCGTGGCCGATGCCATTGTTGCTG
CTTTGGCAGCCCCTGCGCCCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(371-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D2Q2R5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.676

100

0.5
  radA Streptococcus pneumoniae Rx1

48.402

95.217

0.461
  radA Streptococcus pneumoniae D39

48.402

95.217

0.461
  radA Streptococcus pneumoniae R6

48.402

95.217

0.461
  radA Streptococcus pneumoniae TIGR4

48.402

95.217

0.461
  radA Streptococcus mitis NCTC 12261

48.402

95.217

0.461
  radA Streptococcus mitis SK321

48.402

95.217

0.461

Multiple sequence alignment