Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   YA91_RS22555 Genome accession   NZ_CP023248
Coordinates   3071054..3071728 (-) Length   224 a.a.
NCBI ID   WP_005482037.1    Uniprot ID   Q87T86
Organism   Vibrio parahaemolyticus strain MAVP-26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3066054..3076728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YA91_RS22525 (YA91_24020) coaD 3066672..3067154 (-) 483 WP_005462497.1 pantetheine-phosphate adenylyltransferase -
  YA91_RS22530 (YA91_24025) mutM 3067251..3068060 (-) 810 WP_005496819.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  YA91_RS22535 (YA91_24030) - 3068164..3068640 (-) 477 WP_005496818.1 hypothetical protein -
  YA91_RS22540 (YA91_24035) - 3068710..3070242 (-) 1533 WP_005496817.1 phosphoethanolamine transferase -
  YA91_RS22545 (YA91_24040) rpmG 3070330..3070500 (-) 171 WP_004410866.1 50S ribosomal protein L33 -
  YA91_RS22550 (YA91_24045) rpmB 3070514..3070750 (-) 237 WP_005467944.1 50S ribosomal protein L28 -
  YA91_RS22555 (YA91_24050) radC 3071054..3071728 (-) 675 WP_005482037.1 DNA repair protein RadC Machinery gene
  YA91_RS22560 (YA91_24055) - 3071842..3073515 (-) 1674 WP_005496816.1 methyl-accepting chemotaxis protein -
  YA91_RS22565 (YA91_24065) coaBC 3073700..3074899 (+) 1200 WP_005496815.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  YA91_RS22570 (YA91_24070) slmA 3075060..3075650 (+) 591 WP_005478760.1 nucleoid occlusion factor SlmA -
  YA91_RS22575 (YA91_24075) - 3075656..3076606 (+) 951 WP_005496814.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25334.11 Da        Isoelectric Point: 6.6112

>NTDB_id=205582 YA91_RS22555 WP_005482037.1 3071054..3071728(-) (radC) [Vibrio parahaemolyticus strain MAVP-26]
MILKALPNESMPREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=205582 YA91_RS22555 WP_005482037.1 3071054..3071728(-) (radC) [Vibrio parahaemolyticus strain MAVP-26]
ATGATACTCAAAGCTTTGCCAAATGAGTCGATGCCTCGAGAGAAACTTCTGCAACGTGGGCCGCAGGCGTTAACAGATGC
CGAATTACTGGCGATATTTCTCCGTACGGGCACGCAAGGCATGAACGTGATTGAGTTGGCCGATTTCCTTATTCAAGATT
TTGGTTCGCTTAGGCAGCTGTTCTCCGCTTCAGAACAGGAGTTTTGTCAGCATAAAGGGTTAGGGCAGGCCAAATATGTG
CAATTGCAAGCGGTGTTAGAAATGACTCAGCGATATTTGGCGGAAACCCTCAAGCGTGGCGACGCCTTAACCAGCCCTGA
GCAAACTAAATTATATCTCTCCTCTATATTAAGAGACCGCCAAAGAGAGGCTTTTTACATTCTTTTCCTCGATAACCAAC
ACCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACCTTGGATGCCGCATCAGTTTACCCTAGAGAAGTAGTAAAAAGA
GCCCTGCACCACAACGCGGCTGCTTTGATTTTGGCGCATAACCACCCGTCCGGTGTCGCCGAGCCAAGCCAGGCAGACCG
CAGGATTACAAGGCGATTAATTGATGCGTTGGCGTTGGTGGATATTCGCATTTTGGACCATTTCGTTATTGGCGATGGGG
AAAGTGTCTCTTTTGCAGAAAGAGGATGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87T86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.613

96.875

0.5
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.739

99.107

0.384