Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CLC88_RS15805 Genome accession   NZ_CP023165
Coordinates   3077194..3077931 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O22:H8 strain RM10809-3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3072194..3082931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC88_RS15790 (CLC88_16155) clpC 3072648..3075221 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CLC88_RS15795 (CLC88_16160) yfiH 3075351..3076082 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  CLC88_RS15800 (CLC88_16165) rluD 3076079..3077059 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CLC88_RS15805 (CLC88_16170) comL 3077194..3077931 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CLC88_RS15810 (CLC88_16175) raiA 3078202..3078543 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CLC88_RS15815 (CLC88_16180) pheL 3078647..3078694 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CLC88_RS15820 (CLC88_16185) pheA 3078793..3079953 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  CLC88_RS15825 (CLC88_16190) tyrA 3079996..3081117 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CLC88_RS15830 (CLC88_16195) aroF 3081128..3082198 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CLC88_RS15835 (CLC88_16200) yfiL 3082408..3082773 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=205461 CLC88_RS15805 WP_000197686.1 3077194..3077931(+) (comL) [Escherichia coli O22:H8 strain RM10809-3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=205461 CLC88_RS15805 WP_000197686.1 3077194..3077931(+) (comL) [Escherichia coli O22:H8 strain RM10809-3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment