Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | A2U21_RS08500 | Genome accession | NZ_CP018034 |
| Coordinates | 1650025..1650546 (-) | Length | 173 a.a. |
| NCBI ID | WP_005712507.1 | Uniprot ID | A0A836ME07 |
| Organism | Glaesserella parasuis str. Nagasaki | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1645025..1655546
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A2U21_RS08465 (A2U21_08175) | - | 1645267..1645896 (-) | 630 | WP_010785950.1 | LysE family transporter | - |
| A2U21_RS08470 (A2U21_08180) | - | 1645898..1646368 (-) | 471 | WP_005712497.1 | phosphatidylglycerophosphatase A | - |
| A2U21_RS08475 (A2U21_08185) | thiL | 1646371..1647339 (-) | 969 | WP_021110497.1 | thiamine-phosphate kinase | - |
| A2U21_RS08480 (A2U21_08190) | nusB | 1647348..1647761 (-) | 414 | WP_010785952.1 | transcription antitermination factor NusB | - |
| A2U21_RS08485 (A2U21_08195) | comE | 1647840..1649102 (-) | 1263 | WP_005712502.1 | type IV pilus secretin PilQ | Machinery gene |
| A2U21_RS08490 (A2U21_08200) | comD | 1649112..1649453 (-) | 342 | WP_230205898.1 | hypothetical protein | Machinery gene |
| A2U21_RS08495 (A2U21_08205) | comC | 1649498..1650028 (-) | 531 | WP_015940159.1 | hypothetical protein | Machinery gene |
| A2U21_RS08500 (A2U21_08210) | comB | 1650025..1650546 (-) | 522 | WP_005712507.1 | hypothetical protein | Machinery gene |
| A2U21_RS08505 (A2U21_08215) | comA | 1650522..1651199 (-) | 678 | WP_005712510.1 | hypothetical protein | Machinery gene |
| A2U21_RS08510 (A2U21_08220) | - | 1651353..1653908 (+) | 2556 | WP_035498541.1 | penicillin-binding protein 1A | - |
| A2U21_RS08515 (A2U21_08225) | aroK | 1654138..1654659 (+) | 522 | WP_015940157.1 | shikimate kinase AroK | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 20324.01 Da Isoelectric Point: 7.3557
>NTDB_id=205213 A2U21_RS08500 WP_005712507.1 1650025..1650546(-) (comB) [Glaesserella parasuis str. Nagasaki]
MEWQGINLNGYRQQQWLKQSQKNLKHLTACIVISTLLALLISWQNQQQQHQFHTLAQQRQQSQEQQTALSQQIEQLTLQS
QNKSTQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSQLEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE
MEWQGINLNGYRQQQWLKQSQKNLKHLTACIVISTLLALLISWQNQQQQHQFHTLAQQRQQSQEQQTALSQQIEQLTLQS
QNKSTQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSQLEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE
Nucleotide
Download Length: 522 bp
>NTDB_id=205213 A2U21_RS08500 WP_005712507.1 1650025..1650546(-) (comB) [Glaesserella parasuis str. Nagasaki]
ATGGAATGGCAAGGTATCAATCTAAACGGCTATCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACCGCTTGCATTGTGATTAGCACACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCGCATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAAAATAAAAGCACACAAAGCCTAGAGAACAGACAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
GATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAGGTGTCTAGCCCTACTCAAT
TTAGCCAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA
ATGGAATGGCAAGGTATCAATCTAAACGGCTATCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACCGCTTGCATTGTGATTAGCACACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCGCATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAAAATAAAAGCACACAAAGCCTAGAGAACAGACAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
GATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAGGTGTCTAGCCCTACTCAAT
TTAGCCAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Glaesserella parasuis strain SC1401 |
97.11 |
100 |
0.971 |