Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | A2U21_RS08490 | Genome accession | NZ_CP018034 |
| Coordinates | 1649112..1649453 (-) | Length | 113 a.a. |
| NCBI ID | WP_230205898.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis str. Nagasaki | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1644112..1654453
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A2U21_RS08460 (A2U21_08170) | trxA | 1644656..1644970 (-) | 315 | WP_005712493.1 | thioredoxin | - |
| A2U21_RS08465 (A2U21_08175) | - | 1645267..1645896 (-) | 630 | WP_010785950.1 | LysE family transporter | - |
| A2U21_RS08470 (A2U21_08180) | - | 1645898..1646368 (-) | 471 | WP_005712497.1 | phosphatidylglycerophosphatase A | - |
| A2U21_RS08475 (A2U21_08185) | thiL | 1646371..1647339 (-) | 969 | WP_021110497.1 | thiamine-phosphate kinase | - |
| A2U21_RS08480 (A2U21_08190) | nusB | 1647348..1647761 (-) | 414 | WP_010785952.1 | transcription antitermination factor NusB | - |
| A2U21_RS08485 (A2U21_08195) | comE | 1647840..1649102 (-) | 1263 | WP_005712502.1 | type IV pilus secretin PilQ | Machinery gene |
| A2U21_RS08490 (A2U21_08200) | comD | 1649112..1649453 (-) | 342 | WP_230205898.1 | hypothetical protein | Machinery gene |
| A2U21_RS08495 (A2U21_08205) | comC | 1649498..1650028 (-) | 531 | WP_015940159.1 | hypothetical protein | Machinery gene |
| A2U21_RS08500 (A2U21_08210) | comB | 1650025..1650546 (-) | 522 | WP_005712507.1 | hypothetical protein | Machinery gene |
| A2U21_RS08505 (A2U21_08215) | comA | 1650522..1651199 (-) | 678 | WP_005712510.1 | hypothetical protein | Machinery gene |
| A2U21_RS08510 (A2U21_08220) | - | 1651353..1653908 (+) | 2556 | WP_035498541.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 13177.90 Da Isoelectric Point: 4.8667
>NTDB_id=205211 A2U21_RS08490 WP_230205898.1 1649112..1649453(-) (comD) [Glaesserella parasuis str. Nagasaki]
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPNDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPNDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF
Nucleotide
Download Length: 342 bp
>NTDB_id=205211 A2U21_RS08490 WP_230205898.1 1649112..1649453(-) (comD) [Glaesserella parasuis str. Nagasaki]
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATTCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCGGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATTCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCGGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Glaesserella parasuis strain SC1401 |
92.92 |
100 |
0.929 |