Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | A2U20_RS03480 | Genome accession | NZ_CP018032 |
| Coordinates | 671437..671778 (+) | Length | 113 a.a. |
| NCBI ID | WP_021114623.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis D74 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 666437..676778
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A2U20_RS03460 (A2U20_03420) | - | 666982..669537 (-) | 2556 | WP_043896007.1 | penicillin-binding protein 1A | - |
| A2U20_RS03465 (A2U20_03425) | comA | 669691..670368 (+) | 678 | WP_021112067.1 | hypothetical protein | Machinery gene |
| A2U20_RS03470 (A2U20_03430) | comB | 670344..670865 (+) | 522 | WP_021112068.1 | hypothetical protein | Machinery gene |
| A2U20_RS03475 (A2U20_03435) | comC | 670862..671392 (+) | 531 | WP_043894777.1 | hypothetical protein | Machinery gene |
| A2U20_RS03480 (A2U20_03440) | comD | 671437..671778 (+) | 342 | WP_021114623.1 | pilus assembly, PilP family protein | Machinery gene |
| A2U20_RS03485 (A2U20_03445) | comE | 671788..673050 (+) | 1263 | WP_021112071.1 | type IV pilus secretin PilQ | Machinery gene |
| A2U20_RS03490 (A2U20_03450) | nusB | 673129..673542 (+) | 414 | WP_021112072.1 | transcription antitermination factor NusB | - |
| A2U20_RS03495 (A2U20_03455) | thiL | 673551..674519 (+) | 969 | WP_021117941.1 | thiamine-phosphate kinase | - |
| A2U20_RS03500 (A2U20_03460) | - | 674522..674992 (+) | 471 | WP_021117942.1 | phosphatidylglycerophosphatase A | - |
| A2U20_RS03505 (A2U20_03465) | - | 674994..675623 (+) | 630 | WP_015940164.1 | LysE family transporter | - |
| A2U20_RS03510 (A2U20_03470) | trxA | 675920..676234 (+) | 315 | WP_021117943.1 | thioredoxin | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 13165.91 Da Isoelectric Point: 4.8436
>NTDB_id=205178 A2U20_RS03480 WP_021114623.1 671437..671778(+) (comD) [Glaesserella parasuis D74]
MADPFYAKDNAQDQPHTAKDQNKTTACMPTDKVNEINLTTDFDKLQLIGIIQIDDKIRAIFLDDKKQLIDLYPDDYLSHS
FIQIKEINFKSVSYIDWQKTENCQSPKLFTSKF
MADPFYAKDNAQDQPHTAKDQNKTTACMPTDKVNEINLTTDFDKLQLIGIIQIDDKIRAIFLDDKKQLIDLYPDDYLSHS
FIQIKEINFKSVSYIDWQKTENCQSPKLFTSKF
Nucleotide
Download Length: 342 bp
>NTDB_id=205178 A2U20_RS03480 WP_021114623.1 671437..671778(+) (comD) [Glaesserella parasuis D74]
ATGGCAGATCCTTTTTATGCTAAGGATAACGCCCAAGATCAGCCACACACGGCAAAAGATCAAAACAAAACGACCGCTTG
TATGCCAACGGACAAGGTGAATGAAATTAATCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ATGATAAAATCCGAGCCATTTTTTTAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAAATTAATTTTAAATCTGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCTCCTAA
ATTGTTTACTTCAAAATTTTAG
ATGGCAGATCCTTTTTATGCTAAGGATAACGCCCAAGATCAGCCACACACGGCAAAAGATCAAAACAAAACGACCGCTTG
TATGCCAACGGACAAGGTGAATGAAATTAATCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ATGATAAAATCCGAGCCATTTTTTTAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAAATTAATTTTAAATCTGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCTCCTAA
ATTGTTTACTTCAAAATTTTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Glaesserella parasuis strain SC1401 |
98.23 |
100 |
0.982 |