Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC69_RS00370 Genome accession   NZ_CP023061
Coordinates   71309..71977 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain FORC_069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66309..76977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC69_RS00335 (FORC69_0066) yicC 66328..67191 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  FORC69_RS00345 (FORC69_0067) rph 67318..68034 (+) 717 WP_001247089.1 ribonuclease PH -
  FORC69_RS00350 (FORC69_0068) pyrE 68100..68741 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  FORC69_RS00355 (FORC69_0069) slmA 68778..69374 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  FORC69_RS00360 (FORC69_0070) dut 69481..69939 (-) 459 WP_000976070.1 dUTP diphosphatase -
  FORC69_RS00365 (FORC69_0071) coaBC 69917..71137 (-) 1221 WP_000050117.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FORC69_RS00370 (FORC69_0072) radC 71309..71977 (+) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  FORC69_RS00375 (FORC69_0073) rpmB 72194..72430 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  FORC69_RS00380 (FORC69_0074) rpmG 72451..72618 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  FORC69_RS00385 (FORC69_0075) mutM 72716..73525 (+) 810 WP_001114546.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  FORC69_RS00390 (FORC69_0076) coaD 73564..74043 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  FORC69_RS00395 (FORC69_0077) waaA 74051..75328 (-) 1278 WP_000891571.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  FORC69_RS00400 (FORC69_0078) rfaQ 75741..76799 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=205176 FORC69_RS00370 WP_001298959.1 71309..71977(+) (radC) [Escherichia coli strain FORC_069]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=205176 FORC69_RS00370 WP_001298959.1 71309..71977(+) (radC) [Escherichia coli strain FORC_069]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment