Detailed information NTG0205095

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BM524_RS13480
• Genome accession: NZ_CP018024
• Coordinates: 3141157..3142050 (+)
• Length: 297 a.a.
• NCBI ID: WP_071959751.1
• Uniprot ID: A0AAC9NSK0
• Organism: Alteromonas mediterranea strain CP48
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3136157..3147050

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BM524_RS13455 (BM524_13415)	ampD	3136676..3137212 (-)	537	WP_071959750.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
BM524_RS13460 (BM524_13420)	-	3137388..3137906 (+)	519	WP_012519426.1	retropepsin-like aspartic protease family protein	-
BM524_RS13465 (BM524_13425)	nadC	3137926..3138780 (+)	855	WP_015067810.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BM524_RS13470 (BM524_13430)	-	3139316..3139744 (+)	429	WP_015067811.1	pilin	-
BM524_RS13475 (BM524_13435)	pilC	3139819..3141027 (+)	1209	WP_015067812.1	type II secretion system F family protein	Machinery gene
BM524_RS13480 (BM524_13440)	pilD	3141157..3142050 (+)	894	WP_071959751.1	prepilin peptidase	Machinery gene
BM524_RS13485 (BM524_13445)	coaE	3142072..3142686 (+)	615	WP_071960452.1	dephospho-CoA kinase	-
BM524_RS13490 (BM524_13450)	zapD	3142900..3143652 (+)	753	WP_015067815.1	cell division protein ZapD	-
BM524_RS13495 (BM524_13455)	yacG	3143743..3143970 (+)	228	WP_012519434.1	DNA gyrase inhibitor YacG	-
BM524_RS13500 (BM524_13460)	-	3144163..3145035 (+)	873	WP_071959753.1	aspartoacylase	-
BM524_RS13505 (BM524_13465)	mutT	3145127..3145510 (-)	384	WP_020746438.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32836.86 Da
• Isoelectric Point: 5.8881

>NTDB_id=205095 BM524_RS13480 WP_071959751.1 3141157..3142050(+) (pilD) [Alteromonas mediterranea strain CP48]
MDAIITLSQLYPAIFYTLIFLVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFTDSDTSLDTPNAPSQDDTFNLVKPDST
CPRCGHKIRAWENIPIISYLFLRGKCAKCKVGISVRYPLVELFTAIACTFAAYQFGATPQALWAVVFTYVLVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQNIFVGTTDAIIGAAAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAFTGWQGLPV
IILLSSLVGGIAGIAIMVVQNKGKSLAIPFGPYLAVAGWLTLLFKAEIITTYLDYVL

Nucleotide

• Length: 894 bp

>NTDB_id=205095 BM524_RS13480 WP_071959751.1 3141157..3142050(+) (pilD) [Alteromonas mediterranea strain CP48]
ATGGACGCTATAATAACCCTTAGCCAGCTATACCCCGCTATTTTTTATACCCTTATCTTCTTAGTGAGTTTAATGGTTGG
CAGCTTTTTAAATGTAGTGATCTACCGCTTACCCATCATGATGGAGCGCAGCTGGCAGCAGGAATACCAAAGCTACTTTA
CCGACAGTGATACCAGCTTAGATACACCTAACGCTCCATCGCAAGACGATACCTTTAACCTGGTAAAACCAGACAGCACC
TGCCCGCGCTGCGGCCACAAAATTCGCGCATGGGAAAACATTCCAATAATTAGCTACCTATTTCTAAGGGGCAAATGTGC
CAAGTGCAAGGTAGGTATTTCAGTACGCTATCCGCTGGTTGAGCTTTTCACTGCCATCGCCTGCACCTTCGCAGCCTATC
AGTTTGGCGCTACACCTCAAGCGCTTTGGGCCGTGGTTTTTACCTACGTACTCGTGGCTTTGCTATTTATCGACTTAGAT
AAAATGTTGTTGCCCGACCAGCTCACGCTCCCTTTACTTTGGCTTGGGCTGCTGTTAAGTACTCAAAACATTTTTGTTGG
TACGACCGATGCCATTATTGGCGCGGCGGCAGGCTATTTAAGCTTGTGGTCGGTATATTGGCTATTTAAGCTTGTTACGG
GCAAGGAAGGCATGGGCTATGGCGACTTTAAATTGCTTGCCGCCTTAGGTGCGTTCACAGGCTGGCAAGGGCTCCCCGTT
ATCATCTTACTTTCATCACTGGTGGGCGGCATTGCAGGTATTGCTATTATGGTTGTGCAAAATAAGGGGAAGTCCTTAGC
CATCCCCTTTGGCCCTTACCTTGCTGTAGCAGGGTGGCTTACGCTGCTTTTTAAAGCTGAAATTATCACTACTTACCTTG
ATTACGTGCTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-135)

• Type IV leader peptidase family (Peptidase_A24) (146-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.979	97.306	0.525
pilD	Vibrio campbellii strain DS40M4	53.448	97.643	0.522
pilD	Acinetobacter baumannii D1279779	50.538	93.939	0.475
pilD	Acinetobacter nosocomialis M2	50.538	93.939	0.475
pilD	Neisseria gonorrhoeae MS11	50.385	87.542	0.441