Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   Aba9102_RS09485 Genome accession   NZ_CP023029
Coordinates   1924114..1924749 (+) Length   211 a.a.
NCBI ID   WP_016803680.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 9102     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1919114..1929749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba9102_RS09465 (Aba9102_09465) - 1919190..1920005 (+) 816 WP_000011168.1 DsbC family protein -
  Aba9102_RS09470 (Aba9102_09470) - 1920250..1921551 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  Aba9102_RS09475 (Aba9102_09475) thrC 1921607..1922746 (+) 1140 WP_000063593.1 threonine synthase -
  Aba9102_RS09480 (Aba9102_09480) pbpG 1922855..1923901 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  Aba9102_RS09485 (Aba9102_09485) letA 1924114..1924749 (+) 636 WP_016803680.1 response regulator Regulator
  Aba9102_RS09490 (Aba9102_09490) pilS 1924760..1926328 (+) 1569 WP_001160337.1 sensor histidine kinase Regulator
  Aba9102_RS09495 (Aba9102_09495) - 1926353..1927774 (+) 1422 WP_000840548.1 sigma-54-dependent transcriptional regulator -
  Aba9102_RS09500 (Aba9102_09500) - 1927778..1928962 (-) 1185 WP_000939109.1 S41 family peptidase -

Sequence


Protein


Download         Length: 211 a.a.        Molecular weight: 23135.73 Da        Isoelectric Point: 5.0959

>NTDB_id=204977 Aba9102_RS09485 WP_016803680.1 1924114..1924749(+) (letA) [Acinetobacter baumannii strain 9102]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQETADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=204977 Aba9102_RS09485 WP_016803680.1 1924114..1924749(+) (letA) [Acinetobacter baumannii strain 9102]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTTGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCATTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGTGCCCAAGAAACTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.762

99.526

0.545

  letA Legionella pneumophila strain ERS1305867

54.762

99.526

0.545


Multiple sequence alignment