Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BI355_RS11060 Genome accession   NZ_CP017996
Coordinates   2252979..2253578 (-) Length   199 a.a.
NCBI ID   WP_057867043.1    Uniprot ID   -
Organism   Companilactobacillus crustorum strain MN047     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2247979..2258578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI355_RS11035 (BI355_2209) rplI 2249084..2249539 (-) 456 WP_057867048.1 50S ribosomal protein L9 -
  BI355_RS11040 (BI355_2210) - 2249558..2251561 (-) 2004 WP_057867047.1 DHH family phosphoesterase -
  BI355_RS11045 (BI355_2211) - 2251715..2252257 (-) 543 WP_075888259.1 DUF3278 domain-containing protein -
  BI355_RS11050 (BI355_2212) - 2252226..2252447 (-) 222 WP_057867045.1 helix-turn-helix transcriptional regulator -
  BI355_RS11055 (BI355_2213) rpsR 2252721..2252957 (-) 237 WP_057867044.1 30S ribosomal protein S18 -
  BI355_RS11060 (BI355_2214) ssb 2252979..2253578 (-) 600 WP_057867043.1 single-stranded DNA-binding protein Machinery gene
  BI355_RS11065 (BI355_2215) rpsF 2253616..2253912 (-) 297 WP_075888260.1 30S ribosomal protein S6 -
  BI355_RS11070 (BI355_2216) gyrA 2254116..2256641 (-) 2526 WP_057867041.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21943.20 Da        Isoelectric Point: 4.9528

>NTDB_id=204937 BI355_RS11060 WP_057867043.1 2252979..2253578(-) (ssb) [Companilactobacillus crustorum strain MN047]
MINRVVLVGRLTRDPELRYTANGAAVASFTVAVNRQFTNSQGEREADFIGCTIWRKAAENFVNFTKKGSLVGIDGRIQTS
SYDNQQGQRVYRTDVIVENFSLLESRAESERRDSGSGNSNQASNYNNNSNQSNQSPFGNTNSNNNSYGNNSANNNSNYNN
SNNNSNNNNQSNNSNSNNNGDPFADKSKPIDISDDDLPF

Nucleotide


Download         Length: 600 bp        

>NTDB_id=204937 BI355_RS11060 WP_057867043.1 2252979..2253578(-) (ssb) [Companilactobacillus crustorum strain MN047]
ATGATTAATCGAGTAGTTTTAGTTGGACGCCTGACACGTGATCCTGAATTGAGATATACTGCCAATGGTGCAGCAGTTGC
AAGTTTTACAGTTGCTGTTAACCGTCAGTTTACTAATTCACAGGGCGAACGTGAAGCTGATTTTATCGGTTGTACTATTT
GGAGAAAAGCTGCTGAGAATTTTGTTAATTTCACTAAGAAGGGTTCATTAGTTGGTATCGATGGACGTATTCAAACAAGT
TCATACGATAATCAACAAGGTCAAAGAGTCTACAGAACAGATGTTATTGTAGAAAACTTCTCCTTGCTTGAATCTCGAGC
TGAAAGTGAAAGAAGAGATTCTGGTAGCGGCAATTCCAATCAAGCATCAAACTACAACAATAATTCCAATCAATCAAATC
AGTCTCCGTTCGGAAATACTAACAGTAATAACAATAGTTATGGCAATAATAGTGCCAATAACAATAGTAATTACAATAAT
AGTAACAACAATTCAAATAACAATAATCAATCTAACAATTCTAACAGTAACAATAATGGCGATCCTTTTGCTGATAAAAG
CAAGCCGATTGACATTTCTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.5

100

0.578
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.754

100

0.508

Multiple sequence alignment