Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   Aba9201_RS12395 Genome accession   NZ_CP023020
Coordinates   2521459..2522094 (+) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain 9201     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2516459..2527094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba9201_RS12375 (Aba9201_12355) - 2516536..2517351 (+) 816 WP_000011163.1 DsbC family protein -
  Aba9201_RS12380 (Aba9201_12360) - 2517596..2518897 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  Aba9201_RS12385 (Aba9201_12365) thrC 2518953..2520092 (+) 1140 WP_000063593.1 threonine synthase -
  Aba9201_RS12390 (Aba9201_12370) pbpG 2520200..2521246 (-) 1047 WP_031946417.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  Aba9201_RS12395 (Aba9201_12375) letA 2521459..2522094 (+) 636 WP_000633799.1 response regulator Regulator
  Aba9201_RS12400 (Aba9201_12380) pilS 2522105..2523673 (+) 1569 WP_001160330.1 sensor histidine kinase Regulator
  Aba9201_RS12405 (Aba9201_12385) - 2523697..2525118 (+) 1422 WP_000840550.1 sigma-54-dependent transcriptional regulator -
  Aba9201_RS12410 (Aba9201_12390) - 2525122..2526306 (-) 1185 WP_000939105.1 S41 family peptidase -

Sequence


Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=204763 Aba9201_RS12395 WP_000633799.1 2521459..2522094(+) (letA) [Acinetobacter baumannii strain 9201]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=204763 Aba9201_RS12395 WP_000633799.1 2521459..2522094(+) (letA) [Acinetobacter baumannii strain 9201]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTCGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCGTTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGCGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55

  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55


Multiple sequence alignment