Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CJZ69_RS05885 Genome accession   NZ_CP022959
Coordinates   1176026..1176763 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli ATCC 8739     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1171026..1181763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ69_RS05850 (CJZ69_06055) yfiL 1171176..1171541 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CJZ69_RS05855 (CJZ69_06060) aroF 1171751..1172821 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CJZ69_RS05860 (CJZ69_06065) tyrA 1172832..1173953 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CJZ69_RS05865 (CJZ69_06070) pheA 1173996..1175156 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  CJZ69_RS05870 pheL 1175254..1175301 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CJZ69_RS05875 (CJZ69_06075) raiA 1175405..1175755 (-) 351 WP_000178457.1 ribosome-associated translation inhibitor RaiA -
  CJZ69_RS05885 (CJZ69_06085) comL 1176026..1176763 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CJZ69_RS05890 (CJZ69_06090) rluD 1176898..1177878 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CJZ69_RS05895 (CJZ69_06095) yfiH 1177875..1178606 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  CJZ69_RS05900 (CJZ69_06100) clpC 1178736..1181309 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=204667 CJZ69_RS05885 WP_000197686.1 1176026..1176763(-) (comL) [Escherichia coli ATCC 8739]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=204667 CJZ69_RS05885 WP_000197686.1 1176026..1176763(-) (comL) [Escherichia coli ATCC 8739]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376