Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CJZ79_RS06780 Genome accession   NZ_CP022912
Coordinates   1285891..1286628 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O6:H16 strain 2011EL-1370-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280891..1291628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ79_RS06750 yfiL 1281037..1281414 (-) 378 WP_064764278.1 DUF2799 domain-containing protein -
  CJZ79_RS06755 aroF 1281624..1282694 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CJZ79_RS06760 tyrA 1282705..1283826 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CJZ79_RS06765 pheA 1283869..1285029 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  CJZ79_RS26480 pheL 1285128..1285175 (-) 48 WP_010723158.1 phe operon leader peptide -
  CJZ79_RS06770 raiA 1285279..1285620 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CJZ79_RS06780 comL 1285891..1286628 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CJZ79_RS06785 rluD 1286763..1287743 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CJZ79_RS06790 yfiH 1287740..1288471 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  CJZ79_RS06795 clpC 1288601..1291174 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=204592 CJZ79_RS06780 WP_000197686.1 1285891..1286628(-) (comL) [Escherichia coli O6:H16 strain 2011EL-1370-2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=204592 CJZ79_RS06780 WP_000197686.1 1285891..1286628(-) (comL) [Escherichia coli O6:H16 strain 2011EL-1370-2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment