Detailed information NTG0204429

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: BAMY_RS17160
• Genome accession: NZ_CP017953
• Coordinates: 3429693..3430856 (-)
• Length: 387 a.a.
• NCBI ID: WP_003151385.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Y14
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3424693..3435856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY_RS17130 (BAMY_16750)	-	3424958..3425377 (-)	420	WP_003151392.1	TIGR03826 family flagellar region protein	-
BAMY_RS17135 (BAMY_16755)	comFC	3425451..3426140 (-)	690	WP_196769287.1	phosphoribosyltransferase family protein	Machinery gene
BAMY_RS17140 (BAMY_16760)	-	3426146..3426430 (-)	285	WP_003151389.1	late competence development ComFB family protein	-
BAMY_RS17145 (BAMY_16765)	comFA	3426488..3427873 (-)	1386	WP_025853539.1	DEAD/DEAH box helicase	Machinery gene
BAMY_RS17150 (BAMY_16770)	-	3427981..3428829 (-)	849	WP_003151387.1	DegV family protein	-
BAMY_RS17155 (BAMY_16775)	degU	3428927..3429616 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
BAMY_RS17160 (BAMY_16780)	degS	3429693..3430856 (-)	1164	WP_003151385.1	two-component sensor histidine kinase DegS	Regulator
BAMY_RS17165 (BAMY_16785)	-	3431079..3431726 (+)	648	WP_003151384.1	YigZ family protein	-
BAMY_RS17170 (BAMY_16790)	-	3431731..3432945 (+)	1215	WP_003151383.1	LCP family protein	-
BAMY_RS17175 (BAMY_16795)	-	3433035..3434111 (-)	1077	WP_003151382.1	glycosyltransferase family 4 protein	-
BAMY_RS17180 (BAMY_16800)	tuaH	3434244..3435440 (-)	1197	WP_003151381.1	teichuronic acid biosynthesis protein TuaH	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.82 Da
• Isoelectric Point: 7.1378

>NTDB_id=204429 BAMY_RS17160 WP_003151385.1 3429693..3430856(-) (degS) [Bacillus amyloliquefaciens strain Y14]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=204429 BAMY_RS17160 WP_003151385.1 3429693..3430856(-) (degS) [Bacillus amyloliquefaciens strain Y14]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGCTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAGATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTTCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGACGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAACATTCAGAGTCAGAGGAAATAACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.325	99.483	0.948