Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BAMY_RS17135 Genome accession   NZ_CP017953
Coordinates   3425451..3426140 (-) Length   229 a.a.
NCBI ID   WP_196769287.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3420451..3431140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS17100 (BAMY_16720) fliW 3420542..3420973 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  BAMY_RS17105 (BAMY_16725) - 3421003..3421572 (-) 570 WP_007407476.1 DUF6470 family protein -
  BAMY_RS17110 (BAMY_16730) flgL 3421663..3422580 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  BAMY_RS17115 (BAMY_16735) flgK 3422592..3424109 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  BAMY_RS17120 (BAMY_16740) - 3424125..3424607 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BAMY_RS17125 (BAMY_16745) flgM 3424622..3424888 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAMY_RS17130 (BAMY_16750) - 3424958..3425377 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  BAMY_RS17135 (BAMY_16755) comFC 3425451..3426140 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  BAMY_RS17140 (BAMY_16760) - 3426146..3426430 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAMY_RS17145 (BAMY_16765) comFA 3426488..3427873 (-) 1386 WP_025853539.1 DEAD/DEAH box helicase Machinery gene
  BAMY_RS17150 (BAMY_16770) - 3427981..3428829 (-) 849 WP_003151387.1 DegV family protein -
  BAMY_RS17155 (BAMY_16775) degU 3428927..3429616 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAMY_RS17160 (BAMY_16780) degS 3429693..3430856 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25265.91 Da        Isoelectric Point: 8.4880

>NTDB_id=204426 BAMY_RS17135 WP_196769287.1 3425451..3426140(-) (comFC) [Bacillus amyloliquefaciens strain Y14]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGSVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKSAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=204426 BAMY_RS17135 WP_196769287.1 3425451..3426140(-) (comFC) [Bacillus amyloliquefaciens strain Y14]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCTCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAATCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment