Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BAMY_RS12235 Genome accession   NZ_CP017953
Coordinates   2494208..2495278 (-) Length   356 a.a.
NCBI ID   WP_003153083.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2489208..2500278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS12185 (BAMY_11920) sipW 2489268..2489852 (-) 585 WP_025852917.1 signal peptidase I SipW -
  BAMY_RS12190 (BAMY_11925) tapA 2489824..2490495 (-) 672 WP_025852919.1 amyloid fiber anchoring/assembly protein TapA -
  BAMY_RS12195 (BAMY_11930) - 2490754..2491083 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  BAMY_RS12200 (BAMY_11935) - 2491123..2491302 (-) 180 WP_003153093.1 YqzE family protein -
  BAMY_RS12205 (BAMY_11940) comGG 2491359..2491736 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAMY_RS12210 (BAMY_11945) comGF 2491737..2492237 (-) 501 WP_226565836.1 competence type IV pilus minor pilin ComGF -
  BAMY_RS12215 (BAMY_11950) comGE 2492146..2492460 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  BAMY_RS12220 (BAMY_11955) comGD 2492444..2492881 (-) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAMY_RS12225 (BAMY_11960) comGC 2492871..2493179 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  BAMY_RS12230 (BAMY_11965) comGB 2493184..2494221 (-) 1038 WP_024085602.1 competence type IV pilus assembly protein ComGB Machinery gene
  BAMY_RS12235 (BAMY_11970) comGA 2494208..2495278 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  BAMY_RS12240 (BAMY_11975) - 2495470..2496420 (-) 951 WP_003153082.1 magnesium transporter CorA family protein -
  BAMY_RS12245 (BAMY_11980) - 2496566..2497867 (+) 1302 WP_014305416.1 hemolysin family protein -
  BAMY_RS12250 (BAMY_11985) - 2497906..2498736 (-) 831 WP_025852928.1 STAS domain-containing protein -
  BAMY_RS12260 (BAMY_11995) - 2498942..2499322 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BAMY_RS12265 (BAMY_12000) - 2499559..2499804 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40529.85 Da        Isoelectric Point: 9.4729

>NTDB_id=204409 BAMY_RS12235 WP_003153083.1 2494208..2495278(-) (comGA) [Bacillus amyloliquefaciens strain Y14]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=204409 BAMY_RS12235 WP_003153083.1 2494208..2495278(-) (comGA) [Bacillus amyloliquefaciens strain Y14]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTCAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCACACGGCCTGCTTCTGTTTACCGGCCCGACCGGCTCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAACGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGAGATGCCGAAACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTTGGGGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACCCGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACAACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374

Multiple sequence alignment