Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BAMY_RS12175 Genome accession   NZ_CP017953
Coordinates   2488036..2488371 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2483036..2493371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS12155 (BAMY_11890) gcvT 2483647..2484747 (-) 1101 WP_003153108.1 glycine cleavage system aminomethyltransferase GcvT -
  BAMY_RS12160 (BAMY_11895) - 2485170..2486840 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  BAMY_RS12165 (BAMY_11900) - 2486858..2487652 (+) 795 WP_014305407.1 YqhG family protein -
  BAMY_RS12170 (BAMY_11905) sinI 2487829..2488002 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  BAMY_RS12175 (BAMY_11910) sinR 2488036..2488371 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BAMY_RS12180 (BAMY_11915) tasA 2488419..2489204 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  BAMY_RS12185 (BAMY_11920) sipW 2489268..2489852 (-) 585 WP_025852917.1 signal peptidase I SipW -
  BAMY_RS12190 (BAMY_11925) tapA 2489824..2490495 (-) 672 WP_025852919.1 amyloid fiber anchoring/assembly protein TapA -
  BAMY_RS12195 (BAMY_11930) - 2490754..2491083 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  BAMY_RS12200 (BAMY_11935) - 2491123..2491302 (-) 180 WP_003153093.1 YqzE family protein -
  BAMY_RS12205 (BAMY_11940) comGG 2491359..2491736 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAMY_RS12210 (BAMY_11945) comGF 2491737..2492237 (-) 501 WP_226565836.1 competence type IV pilus minor pilin ComGF -
  BAMY_RS12215 (BAMY_11950) comGE 2492146..2492460 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  BAMY_RS12220 (BAMY_11955) comGD 2492444..2492881 (-) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAMY_RS12225 (BAMY_11960) comGC 2492871..2493179 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=204403 BAMY_RS12175 WP_003153104.1 2488036..2488371(+) (sinR) [Bacillus amyloliquefaciens strain Y14]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=204403 BAMY_RS12175 WP_003153104.1 2488036..2488371(+) (sinR) [Bacillus amyloliquefaciens strain Y14]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment