Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BAMY_RS01985 Genome accession   NZ_CP017953
Coordinates   383962..384915 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378962..389915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS01955 (BAMY_01915) - 379006..380439 (+) 1434 WP_162130794.1 sensor histidine kinase -
  BAMY_RS01960 (BAMY_01920) rapC 380592..381740 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  BAMY_RS01965 (BAMY_01925) phrC 381724..381843 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAMY_RS01970 - 381993..382103 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  BAMY_RS01975 (BAMY_01930) - 382183..383547 (-) 1365 WP_003156333.1 aspartate kinase -
  BAMY_RS01985 (BAMY_01935) ceuB 383962..384915 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  BAMY_RS01990 (BAMY_01940) - 384905..385852 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  BAMY_RS01995 (BAMY_01945) - 385846..386604 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -
  BAMY_RS02000 (BAMY_01950) - 386626..387570 (+) 945 WP_071543293.1 siderophore ABC transporter substrate-binding protein -
  BAMY_RS02005 (BAMY_01955) - 387612..389036 (-) 1425 WP_015388705.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=204373 BAMY_RS01985 WP_003156332.1 383962..384915(+) (ceuB) [Bacillus amyloliquefaciens strain Y14]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=204373 BAMY_RS01985 WP_003156332.1 383962..384915(+) (ceuB) [Bacillus amyloliquefaciens strain Y14]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCCTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTCTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment