Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MJ_RS04150 Genome accession   NC_000909
Coordinates   699609..700508 (-) Length   299 a.a.
NCBI ID   WP_010870284.1    Uniprot ID   -
Organism   Methanocaldococcus jannaschii DSM 2661     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 694609..705508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ_RS04125 (MJ0774) - 695227..696456 (+) 1230 WP_010870279.1 ArsR family transcriptional regulator -
  MJ_RS04130 (MJ0775) mptA 696440..697381 (+) 942 WP_064496622.1 GTP cyclohydrolase MptA -
  MJ_RS04135 (MJ0776) - 697428..698525 (+) 1098 WP_244409505.1 ATP-grasp domain-containing protein -
  MJ_RS04140 (MJ0777) tfe 698491..699048 (+) 558 WP_064496623.1 transcription factor E -
  MJ_RS04145 (MJ0778) - 699096..699605 (+) 510 WP_010870283.1 TIGR00295 family protein -
  MJ_RS04150 (MJ0779) epdJ 699609..700508 (-) 900 WP_010870284.1 type II secretion system F family protein Machinery gene
  MJ_RS04155 (MJ0780) - 700529..701536 (-) 1008 WP_010870285.1 type II secretion system F family protein -
  MJ_RS04160 (MJ0781) - 701559..703658 (-) 2100 WP_064496624.1 intein-containing protein -
  MJ_RS09715 - 703765..704484 (-) 720 Protein_829 transcription initiation factor IIB -
  MJ_RS09720 - 704491..705498 (-) 1008 Protein_830 endonuclease -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33291.27 Da        Isoelectric Point: 9.8940

>NTDB_id=20435 MJ_RS04150 WP_010870284.1 699609..700508(-) (epdJ) [Methanocaldococcus jannaschii DSM 2661]
MPKYLTTLYKRTIKRNIILFKKLGKDFDEKKFILLLIIIAAIPLLISYYLHLTLKSMIIFVVIYVGAALFIPSILYENKI
ETLENNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQKLSFEESMTIVSNLYDSKVLRMLARIM
IENRKYGGDLSDSLKILAKTLEDFKMYKRQLLSVTASGLAIGFIILCGVIPAVAALLGAYLIAVSGMLSGVAPIPPVKPE
DISKGFEIVQMGTAIIGALFAIPIFGLKIGRMFLISAVTMTIGVLAYYTILKFAPGIFS

Nucleotide


Download         Length: 900 bp        

>NTDB_id=20435 MJ_RS04150 WP_010870284.1 699609..700508(-) (epdJ) [Methanocaldococcus jannaschii DSM 2661]
ATGCCCAAATACCTGACAACTCTATATAAAAGAACAATAAAAAGGAATATTATACTCTTTAAAAAACTTGGTAAGGATTT
TGACGAAAAAAAGTTTATATTATTGTTAATAATTATAGCTGCGATACCTCTCCTAATATCATATTATTTACACTTAACCC
TAAAAAGTATGATTATATTTGTAGTTATATACGTGGGAGCTGCATTGTTCATTCCATCTATTTTATATGAAAATAAAATA
GAAACTCTTGAGAATAACATTCCACAAGCTCTTTATATTATGATATTAGCCCTCGAATCTGGAAGGTCCATAAACGAAGC
ATTACTTGAAGTTGTTAAAAGTAATATAAAGGAAGTTAGCGATATATTTAGAAAAGTTTTATACTTAATGGAAAACCAAA
AATTAAGTTTTGAAGAGTCTATGACAATTGTATCCAATTTATATGATTCTAAAGTATTAAGGATGTTAGCAAGAATTATG
ATTGAAAACAGGAAATACGGAGGAGATTTGTCAGATTCTCTAAAAATATTAGCTAAAACTCTTGAAGACTTTAAAATGTA
TAAGAGACAGTTATTGAGTGTTACAGCAAGTGGTTTAGCTATTGGTTTTATTATATTATGTGGAGTTATTCCAGCTGTTG
CCGCATTATTGGGAGCTTATTTAATAGCAGTATCAGGCATGTTAAGTGGAGTAGCTCCAATACCCCCAGTTAAACCAGAA
GATATATCAAAAGGATTTGAAATTGTGCAAATGGGAACGGCAATTATAGGAGCTTTATTTGCAATTCCAATATTTGGTTT
AAAAATAGGGAGAATGTTCCTAATTTCTGCAGTAACTATGACAATCGGTGTTTTAGCATATTATACAATCTTAAAATTCG
CTCCAGGAATATTCTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(93-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

48.322

99.666

0.482

Multiple sequence alignment