Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PSJM300_00220 Genome accession   CP003725
Coordinates   47938..48963 (+) Length   341 a.a.
NCBI ID   AFN76128.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 42938..53963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_00200 trkA 43525..44898 (-) 1374 AFN76124.1 potassium transporter peripheral membrane component -
  PSJM300_00205 - 44955..46301 (-) 1347 AFN76125.1 16S rRNA methyltransferase B -
  PSJM300_00210 fmt 46298..47239 (-) 942 AFN76126.1 methionyl-tRNA formyltransferase -
  PSJM300_00215 def 47284..47790 (-) 507 AFN76127.1 peptide deformylase -
  PSJM300_00220 tsaP 47938..48963 (+) 1026 AFN76128.1 hypothetical protein Machinery gene
  PSJM300_00225 dprA 49041..50138 (+) 1098 AFN76129.1 DNA processing protein DprA Machinery gene
  PSJM300_00230 - 50199..50756 (+) 558 AFN76130.1 hypothetical protein -
  PSJM300_00235 - 50850..51827 (-) 978 AFN76131.1 quinone oxidoreductase -
  PSJM300_00240 - 51975..52889 (+) 915 AFN76132.1 coproporphyrinogen III oxidase -
  PSJM300_00245 aroE 52926..53744 (+) 819 AFN76133.1 shikimate 5-dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37697.93 Da        Isoelectric Point: 4.9212

>NTDB_id=20433 PSJM300_00220 AFN76128.1 47938..48963(+) (tsaP) [Pseudomonas stutzeri DSM 10701]
MRKSLLALLLVAVGGIAHAAVQLKDDHPEQYTVVKGDTLWDISGRFLREPWKWPELWHANPQIENPHLIYPGDNLSLVYI
DGQPRLTLNRGTSRGTIKLSPTVRTTPMAEAIPTIPLEAINSFLLSNRIIDSAEQFEAAPYIVAGNAERVISGSGDRIYG
RGAFEDGMPVYGIFRQGKTYFDPETQEFLGINADDVGTAEILDMEGDIATMMLTRVTQEARIGDRLFPSEERAVNSTFMP
SEPEGEIKGVILDVPRGVTQIGQFDVVTLNKGARDGIKDGNVLAVYKTGETVRDRVTGENVKIPDERAGLLMVFRTYEKL
SYGLVLQATRSLAVQDKVRNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=20433 PSJM300_00220 AFN76128.1 47938..48963(+) (tsaP) [Pseudomonas stutzeri DSM 10701]
ATGAGGAAATCACTACTCGCCCTGCTGCTGGTGGCTGTCGGCGGTATCGCCCACGCCGCCGTTCAGCTCAAGGATGACCA
CCCCGAGCAGTACACCGTGGTGAAGGGCGATACGCTCTGGGACATTTCCGGGCGTTTTTTGCGTGAACCCTGGAAATGGC
CCGAGCTGTGGCATGCCAATCCGCAGATCGAAAACCCGCACCTGATCTACCCCGGCGACAACCTCAGCCTGGTCTACATC
GACGGCCAGCCGCGGTTGACGCTCAACCGTGGCACCTCGCGCGGCACCATCAAACTCTCCCCCACGGTGCGCACCACGCC
GATGGCCGAAGCCATCCCGACCATTCCGCTGGAAGCCATCAACAGCTTCCTGCTGAGCAACCGCATCATCGACAGTGCCG
AGCAGTTCGAGGCCGCACCCTACATCGTCGCCGGCAACGCCGAGCGCGTCATCAGTGGTTCGGGCGACCGCATCTACGGG
CGCGGCGCGTTCGAGGACGGCATGCCGGTGTACGGCATCTTCCGCCAGGGCAAGACCTACTTCGACCCGGAAACCCAGGA
ATTCCTCGGCATCAACGCCGATGACGTCGGCACTGCCGAAATCCTCGACATGGAAGGCGACATCGCCACCATGATGCTGA
CCCGCGTGACGCAGGAAGCCCGCATCGGCGACCGCCTGTTCCCCAGCGAAGAGCGCGCGGTCAACTCCACCTTCATGCCC
AGTGAGCCGGAAGGCGAGATCAAGGGCGTGATTCTCGACGTGCCGCGTGGCGTGACCCAGATCGGCCAGTTCGATGTGGT
TACCCTCAACAAGGGGGCCCGCGACGGGATCAAGGACGGCAACGTGCTGGCGGTCTACAAGACCGGCGAAACCGTACGCG
ACCGGGTCACCGGCGAGAACGTCAAAATTCCGGATGAGCGCGCCGGGCTGCTGATGGTGTTCCGCACCTACGAGAAGCTC
AGCTACGGCCTGGTGCTGCAAGCCACGCGCTCGCTGGCGGTGCAGGACAAGGTGCGTAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.066

100

0.387

Multiple sequence alignment