Detailed information NTG0204273

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BMU11_RS05895
• Genome accession: NZ_CP017938
• Coordinates: 1224949..1225809 (-)
• Length: 286 a.a.
• NCBI ID: WP_078220068.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain YMC2010/8/T346
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1219949..1230809

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BMU11_RS05870 (BMU11_05695)	-	1220839..1222149 (+)	1311	WP_078220066.1	tetratricopeptide repeat protein	-
BMU11_RS05875 (BMU11_05700)	-	1222226..1222552 (+)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
BMU11_RS05880 (BMU11_05705)	rlmB	1222655..1223404 (+)	750	WP_016142380.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
BMU11_RS05885 (BMU11_05710)	-	1223440..1224354 (+)	915	WP_032038060.1	DMT family transporter	-
BMU11_RS05890 (BMU11_05715)	coaE	1224351..1224947 (-)	597	WP_078220067.1	dephospho-CoA kinase	-
BMU11_RS05895 (BMU11_05720)	pilD	1224949..1225809 (-)	861	WP_078220068.1	prepilin peptidase	Machinery gene
BMU11_RS05900 (BMU11_05725)	pilC	1225809..1227035 (-)	1227	WP_005079343.1	type II secretion system F family protein	Machinery gene
BMU11_RS05905 (BMU11_05730)	pilB	1227062..1228774 (-)	1713	WP_064786110.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BMU11_RS05910 (BMU11_05735)	tpiA	1229066..1229860 (+)	795	WP_046812055.1	triose-phosphate isomerase	-
BMU11_RS05915 (BMU11_05740)	secG	1229873..1230202 (+)	330	WP_002115012.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32241.80 Da
• Isoelectric Point: 7.5057

>NTDB_id=204273 BMU11_RS05895 WP_078220068.1 1224949..1225809(-) (pilD) [Acinetobacter pittii strain YMC2010/8/T346]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPVCQQP
IRWYQNIPVISWLMLRGKCGHCQHRISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=204273 BMU11_RS05895 WP_078220068.1 1224949..1225809(-) (pilD) [Acinetobacter pittii strain YMC2010/8/T346]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGTATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCGTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGGTTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATCGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.154	100	0.962
pilD	Acinetobacter nosocomialis M2	95.804	100	0.958
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437