Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   K08M4_RS04900 Genome accession   NZ_CP017916
Coordinates   1010548..1011936 (+) Length   462 a.a.
NCBI ID   WP_086049048.1    Uniprot ID   -
Organism   Vibrio syngnathi strain K08M4     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1005548..1016936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS04880 (K08M4_09740) rsxB 1005952..1006545 (-) 594 WP_004734040.1 electron transport complex subunit RsxB -
  K08M4_RS04885 (K08M4_09750) rsxA 1006548..1007126 (-) 579 WP_004734039.1 electron transport complex subunit RsxA -
  K08M4_RS04895 (K08M4_09770) uvrB 1008198..1010228 (+) 2031 WP_086049047.1 excinuclease ABC subunit UvrB -
  K08M4_RS04900 (K08M4_09780) luxO 1010548..1011936 (+) 1389 WP_086049048.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  K08M4_RS04905 (K08M4_09790) luxU 1011961..1012305 (+) 345 WP_086049049.1 quorum-sensing phosphorelay protein LuxU -
  K08M4_RS04910 (K08M4_09800) - 1012390..1013277 (-) 888 WP_086049050.1 YvcK family protein -
  K08M4_RS04915 (K08M4_09810) moaA 1013613..1014602 (+) 990 WP_029223023.1 GTP 3',8-cyclase MoaA -
  K08M4_RS04925 (K08M4_09820) moaB 1014959..1015471 (+) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  K08M4_RS04930 (K08M4_09830) moaC 1015484..1015963 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  K08M4_RS04935 (K08M4_09840) moaD 1015960..1016205 (+) 246 WP_086049051.1 molybdopterin synthase sulfur carrier subunit -
  K08M4_RS04940 (K08M4_09850) moaE 1016208..1016681 (+) 474 WP_086049052.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51733.27 Da        Isoelectric Point: 6.1957

>NTDB_id=204057 K08M4_RS04900 WP_086049048.1 1010548..1011936(+) (luxO) [Vibrio syngnathi strain K08M4]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSAEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAEEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNVPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=204057 K08M4_RS04900 WP_086049048.1 1010548..1011936(+) (luxO) [Vibrio syngnathi strain K08M4]
ATGCAATCAAAAACGTTAGATAACAAATCGAAGTATTTGTTAATGGTAGAAGATACCGCGTCGGTAGCAGCGTTATATCG
ATCGTATCTTACACCGCTCGAAATTGATATTAACATTGTTGGCACTGGCCGCGATGCAATCGAGAGTTTGAACCATCGAA
TCCCAGACCTCATTTTATTAGATCTACGCCTGCCCGATATGACGGGTATGGATGTACTGTTTGCTGTAAAACAAAAATAT
CCTGAAGTTCCCGTTATCTTCATGACGGCTCACGGTTCTATCGATACCGCCGTAGAAGCCATGCGACATGGTTCCCAAGA
TTTCCTTATCAAACCGTGTGAAGCCGACCGACTCCGTATTACGGTGAACAACGCGATCCGCAAAGCGACAAAACTCAAAA
ACAGCGCTGAACATCCCGGTAATCAAAACTATCAAGGTTTCATTGGTAGCAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGATTCTGCCGCATCCAGTAAGGCCAGTATTTTCATCACTGGCGAAAGTGGTACCGGTAAAGAGGTGTGTGCTGAAGC
CATTCACGCTGCGAGCAAGCGTGGAGATAAGCCATTTATCGCGATTAACTGTGCGGCGATCCCTAAAGATCTGATTGAGA
GTGAACTGTTTGGTCACGTTAAAGGGGCCTTTACTGGTGCCGCAACCGACCGTCAAGGTGCTGCTGAACTTGCAGACGGT
GGAACACTGTTCCTCGATGAATTGTGTGAAATGGACTTAGAGTTACAAACTAAGCTTCTGCGTTTTATTCAAACCGGTAC
TTTTCAAAAAGTCGGCTCTTCGAAGATGAAGAGTGTGGATGTTCGTTTCGTATGTGCAACCAACCGCGACCCTTGGAAAG
AAGTTCAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCACTGCACTTGCCGCCATTGCGTGAG
CGTGGCGAGGATGTCATCGAAATTGCATATTCATTGCTGGGTTACATGTCTGTCGAAGAAGGTAAGGCGTTCGTACGTTT
TGCTGAAGAAGTACTCGATCGCTTTAATCAATATGAGTGGCCGGGGAACGTTCGTCAGTTACAAAATGTGTTGCGAAATG
TGGTGGTACTGAATAATGGTAAAGAGATTACTCTCAACATGCTTCCACCGCCATTGAACCAACCCATTGAAAACAGTCTT
CGTTTAAAAGAGAAGCAGAACGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
ACAGGCCATTAAAGCGTGTGACGGTAACGTTCCTCGTGCGGCAGGCTTCTTGGATGTCAGTCCGTCTACGATATACCGTA
AATTGCAAACATGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.161

96.97

0.836
  pilR Pseudomonas aeruginosa PAK

38.393

96.97

0.372

Multiple sequence alignment