Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   K08M4_RS02840 Genome accession   NZ_CP017916
Coordinates   569936..570541 (-) Length   201 a.a.
NCBI ID   WP_017103846.1    Uniprot ID   A0AA34XMH3
Organism   Vibrio syngnathi strain K08M4     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 564936..575541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS02830 (K08M4_05600) aceF 565682..567589 (+) 1908 WP_086048781.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  K08M4_RS02835 (K08M4_05610) lpdA 567832..569259 (+) 1428 WP_086048782.1 dihydrolipoyl dehydrogenase -
  K08M4_RS02840 (K08M4_05620) opaR 569936..570541 (-) 606 WP_017103846.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  K08M4_RS02845 (K08M4_05630) hpt 570879..571409 (+) 531 WP_009847591.1 hypoxanthine phosphoribosyltransferase -
  K08M4_RS02850 (K08M4_05640) can 571502..572161 (-) 660 WP_086048783.1 carbonate dehydratase -
  K08M4_RS02855 (K08M4_05650) - 572448..574079 (+) 1632 WP_198299320.1 SulP family inorganic anion transporter -
  K08M4_RS02860 (K08M4_05660) - 574402..575319 (+) 918 WP_086048785.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23250.49 Da        Isoelectric Point: 5.9335

>NTDB_id=204055 K08M4_RS02840 WP_017103846.1 569936..570541(-) (opaR) [Vibrio syngnathi strain K08M4]
MDSITKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLRNIATEMVTLVAQDSNWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTQEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=204055 K08M4_RS02840 WP_017103846.1 569936..570541(-) (opaR) [Vibrio syngnathi strain K08M4]
ATGGACTCAATAACGAAGAGACCTAGAACTAGGCTTTCACCCTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
AGTATTCTCTCGCCGTGGCATTGGCCGCGGTGGACACGCTGACATTGCCGACATCGCTCAGGTGTCAGTAGCAACAGTAT
TTAACTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTACTTAACCACGTTGTTCGTCAATTCTCGAACTTCCTTTCA
GACAACATTGACCTAGATATTCACGCAAAAGAAAATCTACGTAATATTGCGACTGAAATGGTGACTTTAGTGGCTCAAGA
TAGCAATTGGTTAAATGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTGTGGCCTCTGTTTGTAACCACTAACC
GCACTAACCAGATGTTAGTACAAAACATGTTTAGCAAGGCGATTGAACGCGGCGAAGTCTGTGACGATCACGATCCTAAA
CATCTAGCAAATCTATTCCACGGCATTTGCTACTCGCTATTCATCCAAGCGAAACGTGTAGATACACAAGAAGAACTTTC
GACCTTGACGGATAGCTACCTAAATATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment