Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   NCTC11637_01453 Genome accession   LS483488
Coordinates   1468084..1468488 (-) Length   134 a.a.
NCBI ID   SQJ10297.1    Uniprot ID   -
Organism   Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1463084..1473488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCTC11637_01447 recJ 1463628..1465178 (+) 1551 SQJ10218.1 ssDNA-specific exonuclease RecJ -
  NCTC11637_01448 rluD 1465178..1466059 (+) 882 SQJ10223.1 Pseudouridine synthase (RNA-uridine isomerase) (RNA pseudouridylate synthase) -
  NCTC11637_01449 - 1466162..1466722 (-) 561 SQJ10277.1 Uncharacterised protein -
  NCTC11637_01450 - 1466706..1467044 (-) 339 SQJ10294.1 Uncharacterised protein -
  NCTC11637_01451 hcpC_4 1467172..1467954 (-) 783 SQJ10295.1 cysteine-rich protein H -
  NCTC11637_01452 - 1467935..1468024 (-) 90 SQJ10296.1 Uncharacterised protein -
  NCTC11637_01453 dprB 1468084..1468488 (-) 405 SQJ10297.1 Holliday junction resolvase-like protein Machinery gene
  NCTC11637_01454 dprA 1468485..1469285 (-) 801 SQJ10298.1 DNA processing protein DprA Machinery gene
  NCTC11637_01455 minE 1469297..1469530 (-) 234 SQJ10299.1 cell division topological specificity factor MinE -
  NCTC11637_01456 minD 1469527..1470333 (-) 807 SQJ10301.1 cell division inhibitor -
  NCTC11637_01457 ilvC 1470357..1471349 (-) 993 SQJ10336.1 ketol-acid reductoisomerase -
  NCTC11637_01459 nadE 1471598..1472380 (+) 783 SQJ10338.1 NAD synthetase -
  NCTC11637_01460 lpxK 1472377..1473315 (+) 939 SQJ10339.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15283.76 Da        Isoelectric Point: 8.7247

>NTDB_id=20405 NCTC11637_01453 SQJ10297.1 1468084..1468488(-) (dprB) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNKNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=20405 NCTC11637_01453 SQJ10297.1 1468084..1468488(-) (dprB) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955

Multiple sequence alignment