Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   K08M3_RS14710 Genome accession   NZ_CP017913
Coordinates   3104098..3104673 (-) Length   191 a.a.
NCBI ID   WP_017821732.1    Uniprot ID   A0A2I3CBW9
Organism   Vibrio alginolyticus strain K08M3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3099098..3109673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M3_RS14685 (K08M3_28730) aroB 3099397..3100497 (-) 1101 WP_005381318.1 3-dehydroquinate synthase -
  K08M3_RS14690 (K08M3_28740) aroK 3100530..3101048 (-) 519 WP_005381319.1 shikimate kinase AroK -
  K08M3_RS14695 (K08M3_28750) pilQ 3101236..3102981 (-) 1746 WP_005382765.1 type IV pilus secretin PilQ Machinery gene
  K08M3_RS14700 (K08M3_28760) pilP 3103007..3103522 (-) 516 WP_086047068.1 pilus assembly protein PilP Machinery gene
  K08M3_RS14705 (K08M3_28770) pilO 3103512..3104105 (-) 594 WP_017633532.1 type 4a pilus biogenesis protein PilO Machinery gene
  K08M3_RS14710 (K08M3_28780) pilN 3104098..3104673 (-) 576 WP_017821732.1 PilN domain-containing protein Machinery gene
  K08M3_RS14715 (K08M3_28790) pilM 3104657..3105673 (-) 1017 WP_017821733.1 type IV pilus biogenesis protein PilM Machinery gene
  K08M3_RS14720 (K08M3_28800) - 3105818..3108379 (+) 2562 WP_025768081.1 penicillin-binding protein 1A -
  K08M3_RS14725 (K08M3_28810) oxyR 3108433..3109344 (-) 912 WP_005381326.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22349.86 Da        Isoelectric Point: 7.4658

>NTDB_id=204022 K08M3_RS14710 WP_017821732.1 3104098..3104673(-) (pilN) [Vibrio alginolyticus strain K08M3]
MLYRINLLPWRESQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=204022 K08M3_RS14710 WP_017821732.1 3104098..3104673(-) (pilN) [Vibrio alginolyticus strain K08M3]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAGTCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGAGC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGTCTAAAGGTCGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

82.199

100

0.822
  pilN Vibrio cholerae strain A1552

63.277

92.67

0.586

Multiple sequence alignment