Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K08M3_RS14465 Genome accession   NZ_CP017913
Coordinates   3051132..3051671 (-) Length   179 a.a.
NCBI ID   WP_005387798.1    Uniprot ID   A0A2I3CBE0
Organism   Vibrio alginolyticus strain K08M3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3046132..3056671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M3_RS14445 (K08M3_28260) - 3046451..3046783 (-) 333 WP_005381196.1 hypothetical protein -
  K08M3_RS14450 (K08M3_28270) gspM 3046776..3047426 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  K08M3_RS14455 (K08M3_28280) - 3047423..3048868 (-) 1446 WP_054579427.1 hypothetical protein -
  K08M3_RS14460 (K08M3_28290) csrD 3048880..3050889 (-) 2010 WP_054728884.1 RNase E specificity factor CsrD -
  K08M3_RS14465 (K08M3_28300) ssb 3051132..3051671 (-) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  K08M3_RS14470 (K08M3_28310) qstR 3051949..3052593 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  K08M3_RS14475 (K08M3_28320) galU 3052753..3053625 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K08M3_RS14480 (K08M3_28330) uvrA 3053775..3056597 (+) 2823 WP_086047064.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9164

>NTDB_id=204017 K08M3_RS14465 WP_005387798.1 3051132..3051671(-) (ssb) [Vibrio alginolyticus strain K08M3]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=204017 K08M3_RS14465 WP_005387798.1 3051132..3051671(-) (ssb) [Vibrio alginolyticus strain K08M3]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTCGTTGTTCAAGGCTT
CAATGGTGTTATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.816
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

45.405

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.464

Multiple sequence alignment