Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | K08M3_RS13350 | Genome accession | NZ_CP017913 |
| Coordinates | 2838852..2839466 (+) | Length | 204 a.a. |
| NCBI ID | WP_005379994.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain K08M3 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2833852..2844466
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K08M3_RS13330 (K08M3_26060) | - | 2834135..2835052 (-) | 918 | WP_005380000.1 | ABC transporter ATP-binding protein | - |
| K08M3_RS13335 (K08M3_26070) | - | 2835303..2836973 (-) | 1671 | WP_005379997.1 | SulP family inorganic anion transporter | - |
| K08M3_RS13340 (K08M3_26080) | can | 2837255..2837923 (+) | 669 | WP_005379996.1 | carbonate dehydratase | - |
| K08M3_RS13345 (K08M3_26090) | hpt | 2838002..2838532 (-) | 531 | WP_005379995.1 | hypoxanthine phosphoribosyltransferase | - |
| K08M3_RS13350 (K08M3_26100) | opaR | 2838852..2839466 (+) | 615 | WP_005379994.1 | transcriptional regulator OpaR | Regulator |
| K08M3_RS13355 (K08M3_26110) | lpdA | 2839612..2841039 (-) | 1428 | WP_005379993.1 | dihydrolipoyl dehydrogenase | - |
| K08M3_RS13360 (K08M3_26120) | aceF | 2841307..2843205 (-) | 1899 | WP_005386611.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23609.89 Da Isoelectric Point: 6.4042
>NTDB_id=204005 K08M3_RS13350 WP_005379994.1 2838852..2839466(+) (opaR) [Vibrio alginolyticus strain K08M3]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH
Nucleotide
Download Length: 615 bp
>NTDB_id=204005 K08M3_RS13350 WP_005379994.1 2838852..2839466(+) (opaR) [Vibrio alginolyticus strain K08M3]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACGAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGTGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACACCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACGAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGTGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACACCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
97.059 |
100 |
0.971 |
| hapR | Vibrio cholerae C6706 |
73.232 |
97.059 |
0.711 |
| hapR | Vibrio cholerae strain A1552 |
73.232 |
97.059 |
0.711 |