Detailed information NTG0020395

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: NCTC11637_00237
• Genome accession: LS483488
• Coordinates: 243815..244870 (+)
• Length: 351 a.a.
• NCBI ID: SQJ02291.1
• Uniprot ID: -
• Organism: Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 238815..249870

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NCTC11637_00231	-	239236..239649 (+)	414	SQJ02280.1	universal stress global response regulator UspA	-
NCTC11637_00232	clpS	239664..239939 (+)	276	SQJ02285.1	ATP-dependent Clp protease adaptor protein ClpS	-
NCTC11637_00233	clpA	239939..242164 (+)	2226	SQJ02286.1	ATP-dependent C1p protease (clpA)	-
NCTC11637_00234	panD	242154..242507 (+)	354	SQJ02287.1	aspartate 1-decarboxylase	-
NCTC11637_00235	-	242510..242812 (+)	303	SQJ02288.1	transcriptional regulatory protein	-
NCTC11637_00236	-	242812..243807 (+)	996	SQJ02289.1	Putative periplasmic protein	-
NCTC11637_00237	comB6	243815..244870 (+)	1056	SQJ02291.1	NADH-ubiquinone oxidoreductase subunit	Machinery gene
NCTC11637_00238	comB7	244886..244999 (+)	114	SQJ02314.1	comB7 putative lipoprotein	Machinery gene
NCTC11637_00239	comB8	244996..245733 (+)	738	SQJ02315.1	ComB1 protein	Machinery gene
NCTC11637_00240	comB9	245733..246713 (+)	981	SQJ02316.1	ComB9 competence protein	Machinery gene
NCTC11637_00241	comB10	246706..247842 (+)	1137	SQJ02317.1	ComB10 competence protein	Machinery gene
NCTC11637_00242	manC	247913..249325 (+)	1413	SQJ02318.1	mannose-1-phosphate guanylyltransferase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39799.83 Da
• Isoelectric Point: 9.0413

>NTDB_id=20395 NCTC11637_00237 SQJ02291.1 243815..244870(+) (comB6) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLTEALLFVGFFVLFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPLLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNAFNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=20395 NCTC11637_00237 SQJ02291.1 243815..244870(+) (comB6) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGTGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGTGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTCTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTTTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACT
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963