Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   NCTC11637_00122 Genome accession   LS483488
Coordinates   131739..132023 (-) Length   94 a.a.
NCBI ID   SQJ01948.1    Uniprot ID   -
Organism   Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126739..137023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCTC11637_00119 - 126922..131139 (-) 4218 SQJ01945.1 adenine specific DNA methyltransferase -
  NCTC11637_00120 - 131216..131452 (-) 237 SQJ01946.1 Uncharacterised protein -
  NCTC11637_00121 comB3 131464..131727 (-) 264 SQJ01947.1 VirB3 type IV secretion protein Machinery gene
  NCTC11637_00122 comB2 131739..132023 (-) 285 SQJ01948.1 conjugal transfer protein TrbC Machinery gene
  NCTC11637_00123 - 132020..132499 (-) 480 SQJ01949.1 Uncharacterised protein -
  NCTC11637_00124 - 132492..132707 (-) 216 SQJ01950.1 Uncharacterised protein -
  NCTC11637_00125 - 132710..133498 (-) 789 SQJ01951.1 integrase/recombinase (XERCD family) -
  NCTC11637_00126 hsdS_3a 133476..134117 (-) 642 SQJ01952.1 type I restriction enzyme (specificity subunit) -
  NCTC11637_00127 - 134105..134881 (-) 777 SQJ01953.1 CAAX protease -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10722.08 Da        Isoelectric Point: 11.1589

>NTDB_id=20391 NCTC11637_00122 SQJ01948.1 131739..132023(-) (comB2) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMGIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=20391 NCTC11637_00122 SQJ01948.1 131739..132023(-) (comB2) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGAAAAAATTAAGGCATTTTAGAAAACTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGGGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

58.889

95.745

0.564

Multiple sequence alignment