Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   NCTC11637_00216 Genome accession   LS483488
Coordinates   221140..221421 (+) Length   93 a.a.
NCBI ID   SQJ02225.1    Uniprot ID   -
Organism   Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 216140..226421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCTC11637_00212 groES 216715..217071 (-) 357 SQJ02221.1 co-chaperonin GroES -
  NCTC11637_00213 dnaG 217349..219028 (+) 1680 SQJ02222.1 DNA primase -
  NCTC11637_00214 trmU 219025..220077 (+) 1053 SQJ02223.1 tRNA methyltransferase -
  NCTC11637_00215 - 220167..220994 (+) 828 SQJ02224.1 valyl-tRNA synthetase -
  NCTC11637_00216 comB2 221140..221421 (+) 282 SQJ02225.1 ComB2 competence protein Machinery gene
  NCTC11637_00217 comB3 221421..221684 (+) 264 SQJ02226.1 ComB3 competence protein Machinery gene
  NCTC11637_00218 comB4 221686..224049 (+) 2364 SQJ02227.1 type IV secretory pathway component VirB4 Machinery gene
  NCTC11637_00220 - 224368..225708 (+) 1341 SQJ02229.1 putative lipoprotein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=20392 NCTC11637_00216 SQJ02225.1 221140..221421(+) (comB2) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=20392 NCTC11637_00216 SQJ02225.1 221140..221421(+) (comB2) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCTCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment