Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SPG_1581 Genome accession   CP001015
Coordinates   1522595..1523191 (-) Length   198 a.a.
NCBI ID   ACF56269.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1517595..1528191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1577 - 1518526..1519230 (-) 705 ACF55507.1 hypothetical protein -
  SPG_1578 - 1519321..1519932 (-) 612 ACF55624.1 MutT/nudix family protein -
  SPG_1579 murF 1519919..1521292 (-) 1374 ACF55051.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SPG_1580 ddlA 1521376..1522419 (-) 1044 ACF55674.1 D-alanine--D-alanine ligase -
  SPG_1581 recR 1522595..1523191 (-) 597 ACF56269.1 recombination protein RecR Machinery gene
  SPG_1582 - 1523202..1525259 (-) 2058 ACF56789.1 penicillin-binding protein 2B -
  SPG_1583 - 1525459..1526310 (+) 852 ACF54890.1 phosphosugar-binding transcriptional regulator, putative -
  SPG_1584 - 1526326..1527210 (-) 885 ACF55552.1 Glucokinase -
  SPG_1585 - 1527228..1528145 (-) 918 ACF55863.1 N-acetylneuraminate lyase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21688.86 Da        Isoelectric Point: 4.5622

>NTDB_id=20380 SPG_1581 ACF56269.1 1522595..1523191(-) (recR) [Streptococcus pneumoniae G54]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=20380 SPG_1581 ACF56269.1 1522595..1523191(-) (recR) [Streptococcus pneumoniae G54]
ATGCTTTATCCAACACCTATTGCTAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
TCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAAGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCGATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

100

100

1
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment